TCONS_00044144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044144
Unique NameTCONS_00044144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044144 ID=TCONS_00044144|Name=TCONS_00044144|organism=Clytia hemisphaerica|type=transcript|length=508bp
TCCCCACTTAGATTGTTCGCAGCATCGAGGAACCTGAAAAGAAACCGAAA
GAAATTGATAGTTGGATCTCAAGCATTGCCGATTTACACCGTCAAAAACC
ACCGCAGAGTGTTCACTATACCAAGACCATGCCAGATATTGAATCGTTGA
TGCAAGAATGGCCACCGGAGTTTGAAGAGATTTTGAAGAGGactaattta
ccgtcagccgagcTTGATTGTGACCTCTCCGAATATGTTGACGTCATCTg
ttCTATACTCGACATTCCTGTATACAAAGATCGCATCCAATCACTGCACG
TCCTTTTCACTCTTTATTCAGAATTCAAAAACTCACAGGTAAGCCTGTTT
TCTCTTCACTTGAATTGGaggtttttaatcaatttcttattttttttggc
caCTCTCTACTTCGCAATactgagtttatgtatcggaggatatcgagggc
gacggtaagtgaaatcgatacaaaacaaagtcgatagttgatgtacggct
ctatatcg
Run BLAST on NCBI

protein sequence of TCONS_00044144-protein

>TCONS_00044144-protein ID=TCONS_00044144-protein|Name=TCONS_00044144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MPDIESLMQEWPPEFEEILKRTNLPSAELDCDLSEYVDVICSILDIPVYK
DRIQSLHVLFTLYSEFKNSQVSLFSLHLNWRFLINFLFFLATLYFAILSL
CIGGYRGRR
Run BLAST on NCBI

transcript from alignment at sc0005063:1..1067-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044144 ID=TCONS_00044144|Name=TCONS_00044144|organism=Clytia hemisphaerica|type=transcript|length=1067bp|location=Sequence derived from alignment at sc0005063:1..1067- (Clytia hemisphaerica)
TCCCCACTTAGATTGTTCGCAGCATCGAGGAACCTGAAAAGAAACCGAAA
GAAATTGATAGTTGGATCTCAAGCATTGCCGATTTACACCGTCAAAAACC
ACCGCAGAGTGTTCACTATACCAAGACCATGCCAGATATTGAATCGTTGA
TGCAAGAATGGCCACCGGAGTTTGAAGAGATTTTGAAGAGGACTAATTTA
CCGTCAGCCGAGCTTGATTGTGACCTCTCCGAATATGTTGACGTCATCTG
TTGTAAGAAACATTTTTTTCGTTTTTTTTTGTTGTGTTCGAAATTTGATT
TCGATTAGTGCTAATTGGGATTTAATCTAATCGATTTTTGAATTGTTTAG
AGTCCTTTTGAAAGAAAGCCCAGAAATTTGAAAGTGGAAAATTTAAGTAA
AGATTCTTTTTGATTAACTTACTATGGATAGAAAAGTTAAGGAAAGTGAT
AAAACTTTTTGGGAAGTGATTATAGTTGGCTTCGAAAAAAATTTATTCCT
TTAAAAACTTCCCTCGTCAATGTTCTTGTATACTTTGTTCATATAAAAAA
TAATGAGGATGATATACATTTCTTTGTCCCTTTTACCACCCTAAAACCGT
CCCAGTCTTTTTTTCGCACCTAAAGACAATAGAAAAAAGTGTAAAAAAGG
ATTTGATCGAATTAAATAATGAAGTGGCACGCGCCTGACCGCGCGACTAC
GGTCGAAAAGGTGTATTGCTCAATAATATTTTCTAAACACCTTTGCAGTA
GAACTGCCATCTGGTAATTGAAAAATGAATATTTTCAAAACTACTCTTCC
TTTGTTTTCAGCTATACTCGACATTCCTGTATACAAAGATCGCATCCAAT
CACTGCACGTCCTTTTCACTCTTTATTCAGAATTCAAAAACTCACAGGTA
AGCCTGTTTTCTCTTCACTTGAATTGGAGGTTTTTAATCAATTTCTTATT
TTTTTTGGCCACTCTCTACTTCGCAATACTGAGTTTATGTATCGGAGGAT
ATCGAGGGCGACGGTAAGTGAAATCGATACAAAACAAAGTCGATAGTTGA
TGTACGGCTCTATATCG

Coding sequence (CDS) from alignment at sc0005063:1..1067-

>TCONS_00044144 ID=TCONS_00044144|Name=TCONS_00044144|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0005063:1..1067- (Clytia hemisphaerica)
CTATACTCGACATTCCTGTATACAAAGATCGCATCCAATCACTGCACGTC
CTTTTCACTCTTTATTCAGAATTCAAAAACTCACAGGTAAGCCTGTTTTC
TCTTCACTTGAATTGGAGGTTTTTAATCAATTTCTTATTTTTTTTGGCCA
CTCTCTACTTCGCAATACTGAGTTTATGTATCGGAGGATATCGAGGGCGA
CGGTAAATGCCAGATATTGAATCGTTGATGCAAGAATGGCCACCGGAGTT
TGAAGAGATTTTGAAGAGGACTAATTTACCGTCAGCCGAGCTTGATTGTG
ACCTCTCCGAATATGTTGACGTCATCTGTTCTATACTCGACATTCCTGTA
TACAAAGATCGCATCCAATCACTGCACGTCCTTTTCACTCTTTATTCAGA
ATTCAAAAACTCACAGGTAAGCCTGTTTTCTCTTCACTTGAATTGGAGGT
TTTTAATCAATTTCTTATTTTTTTTGGCCACTCTCTACTTCGCAATACTG
AGTTTATGTATCGGAGGATATCGAGGGCGACGGTAAATGCCAGATATTGA
ATCGTTGATGCAAGAATGGCCACCGGAGTTTGAAGAGATTTTGAAGAGGA
CTAATTTACCGTCAGCCGAGCTTGATTGTGACCTCTCCGAATATGTTGAC
GTCATCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027791XLOC_027791Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044144-proteinTCONS_00044144-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044144-exon-sc0005063-1575043694:816..1067TCONS_00044144-exon-sc0005063-1575043694:816..1067Clytia hemisphaericaexon
TCONS_00044144-exon-sc0005063-1575043694:1..256TCONS_00044144-exon-sc0005063-1575043694:1..256Clytia hemisphaericaexon
TCONS_00044144-exon-sc0005063-1510915933:816..1067TCONS_00044144-exon-sc0005063-1510915933:816..1067Clytia hemisphaericaexon
TCONS_00044144-exon-sc0005063-1510915933:1..256TCONS_00044144-exon-sc0005063-1510915933:1..256Clytia hemisphaericaexon
TCONS_00044144-exon-sc0005063-1491911889:816..1067TCONS_00044144-exon-sc0005063-1491911889:816..1067Clytia hemisphaericaexon
TCONS_00044144-exon-sc0005063-1491911889:1..256TCONS_00044144-exon-sc0005063-1491911889:1..256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005063supercontigsc0005063:1..1067 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.9056	24.6232	25.2224	21.0344	46.2001	31.5805	31.6639	42.7326	50.6033	52.5897	42.4707	47.0772	29.5198	30.912	28.5605	31.5572	30.4089	38.2872	30.3891	37.6314	25.0174	25.3733	16.4213	24.3482	55.7056	54.2441	83.2606	81.5643	39.8851	40.6872
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022088Intraflagellar_transp_cmplxB
Vocabulary: Biological Process
TermDefinition
GO:0042073intraciliary transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042073 intraciliary transport
Blast
[Close]
BLAST of TCONS_00044144 vs. Swiss-Prot (Human)
Match: IFT46 (Intraflagellar transport protein 46 homolog OS=Homo sapiens GN=IFT46 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.458e-47
Identity = 75/108 (69.44%), Postives = 96/108 (88.89%), Query Frame = 3 
Query:   15 VRSIXXXXXXXXXIDSWISSIADLHRQKPPQSVHYTKTMPDIESLMQEWPPEFEEILKRTNLPSAELDCDLSEYVDVICSILDIPVYKDRIQSLHVLFTLYSEFKNSQ 338
            V+S+E+ EK PK ID+WI SI++LHR KPP +VHYT+ MPDI++LMQEW PEFEE+L + +LP+AE+DC L+EY+D+IC+ILDIPVYK RIQSLH+LF+LYSEFKNSQ
Sbjct:  166 VKSLEDAEKNPKAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTAEIDCSLAEYIDMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQ 273
The following BLAST results are available for this feature:
BLAST of TCONS_00044144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT462.458e-4769.44Intraflagellar transport protein 46 homolog OS=Hom... [more]
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