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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044125 ID=TCONS_00044125|Name=TCONS_00044125|organism=Clytia hemisphaerica|type=transcript|length=1153bp
GCTGTATCTTGTATTTGTTAATGATTTTGTTATCGtcatatatattttat
ataCCTTTTAGCCAATTACAGGACATGGCGTCGCCGTTGGTTTCAAAtcg
atttcaataaaaaatttgtCGGTTATTACGAAGATGAAACGGCTTGTTTA
CAGTCAACAAACCCGAAAGGAGCTTTCAGTTATATGGGAATCCAATCCGT
ATACGTGGATGATGCAAATAATAAAAACGACAAATATACATTCATTTTAC
GAACGTTCGATAGGACTTATTACATTCGGGCACCGAGTGAGAAAGCTATG
AACTTATGGATGACTTGTTTTTCAATTCCTGTGTCATGTTTAGCACCGAC
TTGATTTGCTGGCAATTTCTATGTTGGTTTGGTACCGACGTTTTGTTAAG
ATTCTCATTGCagcactaagattcctttgccacttttctagcggaaaaag
accaggacttcgtgttgttgaaaaataagcttcggaaagttaggcagttt
cgtgagtaaacacaagattttccgtacctttagaaacaaaccatttccaa
tctcatgccggttatcccggaaaaaaaataatggaaagattccggaaaag
tgaaaacaagaatcttagtgtggaaatgggaatcttatacaaaacgacgg
taaTTTGATTGGAATGATTATTTTCCTTAAGATATCTAAGGCTCCTCTGA
AAATATTCATTTCAATTACAATGTATCAATACTTGATTTTCGACCGTGAT
ACTAATTATGATAGAGATTTATTTTCATACACATCCATTCTATTTTTATA
CACGCATATCTTctgatttttcatattttttattataattttttgtacaa
aggtTTTTGTATACATTTCTTGGTTTCTGCATTCCGAAGAGCGTCTAGAT
CTCCCATGTTCTATGGTAGGCTCGTGGTTATTCAAAGCTCTAACGGGAAA
GAAAGTTTCGTTAGATAGCCAACAAGATTCCGTGTACAGATCTCTCAATA
GATTAAACGCTAACAGGGTTCGCAAATTTGTAAAGGGTTATGAACGGTTC
CACTAAAAACTGGACAAGCCGTACTTTTTTAAACGTTGTTCTTGAGGGAA
AACGATATAATGAAAAGTAATACCTTTCAAGATAGATAAGATTTATTCTT
TGC Run BLAST on NCBI transcript from alignment at sc0005013:648..2533+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044125 ID=TCONS_00044125|Name=TCONS_00044125|organism=Clytia hemisphaerica|type=transcript|length=1886bp|location=Sequence derived from alignment at sc0005013:648..2533+ (Clytia hemisphaerica)
GCTGTATCTTGTATTTGTTAATGATTTTGTTATCGtcatatatattttat
ataCCTTTTAGCCAATTACAGGACATGGCGTCGCCGTTGGTTTCAAAtcg
atttcaataaaaaatttgtCGGTTATTACGAAGATGAAACGGtattatac
aaaatatttttttgactaCCGAAGACTTGAcagaattttctcaaatatac
TTAAAAGACTATTTTTCGCAAATCATAGACTAAGCAAAGCTAATTGAATC
TATttatttcaagaaatactgATCAGCTTTAAAAAAGTTCAGTTTATTTT
CTTGTACTTCGTAAACTTTTGGGAAGAGTGGCCGTGACCTGAAGTGTTTT
TACGGTTCACTATCATTTGGGTGAGGTACTTTTCCAATCTTGCATGATTC
TCTCGGCATCGAGTATTGATTGGTTGGTTATTGGGTTAGTACAATTGGTT
TATTGAACAACTAGAAAAGCTACCCAATTTCGTGAAGTTATATCACGAAT
AAAGTCAACTCTTATTAATTTGAACTTCTGTTATTTGAATCTTTATGCAA
TTCGTTGCaaacagttgactctctctctaattcgatcttcacgggatcaa
aaattttcttcgaattagagaaagattatAACTACAGAGTAGTTTAAATT
AATTACTTTCCGGCTgaagggaccaatattttatttCGAATAAAAGAACT
ATTTGTAAACTGTATGCTTTCCTCAGCCTGAAAGTTATTTATAAACTCTC
CTAGTCTGAACCTTTATATAATTCGAAAAGAATACTTGGTCCCTTAAAGA
TCAAATTAGGGAATGCCTAACTCTATGCATAATTTTACCAATTATcactt
cttctttttatttctcgTCTCTAGGCTTGTTTACAGTCAACAAACCCGAA
AGGAGCTTTCAGTTATATGGGAATCCAATCCGTATACGTGGATGATGCAA
ATAATAAAAACGACAAATATACATTCATTTTACGAACGTTCGATAGGACT
TATTACATTCGGGCACCGAGTGAGAAAGCTATGAACTTATGGATGACTTG
TTTTTCAATTCCTGTGTCATGTTTAGCACCGACTTGATTTGCTGGCAATT
TCTATGTTGGTTTGGTACCGACGTTTTGTTAAGATTCTCATTGCagcact
aagattcctttgccacttttctagcggaaaaagaccaggacttcgtgttg
ttgaaaaataagcttcggaaagttaggcagtttcgtgagtaaacacaaga
ttttccgtacctttagaaacaaaccatttccaatctcatgccggttatcc
cggaaaaaaaataatggaaagattccggaaaagtgaaaacaagaatctta
gtgtggaaatgggaatcttatacaaaacgacggtaaTTTGATTGGAATGA
TTATTTTCCTTAAGATATCTAAGGCTCCTCTGAAAATATTCATTTCAATT
ACAATGTATCAATACTTGATTTTCGACCGTGATACTAATTATGATAGAGA
TTTATTTTCATACACATCCATTCTATTTTTATACACGCATATCTTctgat
ttttcatattttttattataattttttgtacaaaggtTTTTGTATACATT
TCTTGGTTTCTGCATTCCGAAGAGCGTCTAGATCTCCCATGTTCTATGGT
AGGCTCGTGGTTATTCAAAGCTCTAACGGGAAAGAAAGTTTCGTTAGATA
GCCAACAAGATTCCGTGTACAGATCTCTCAATAGATTAAACGCTAACAGG
GTTCGCAAATTTGTAAAGGGTTATGAACGGTTCCACTAAAAACTGGACAA
GCCGTACTTTTTTAAACGTTGTTCTTGAGGGAAAACGATATAATGAAAAG
TAATACCTTTCAAGATAGATAAGATTTATTCTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044125-exon-sc0005013-1491911889:648..788 | TCONS_00044125-exon-sc0005013-1491911889:648..788 | Clytia hemisphaerica | exon |
| TCONS_00044125-exon-sc0005013-1510915933:648..788 | TCONS_00044125-exon-sc0005013-1510915933:648..788 | Clytia hemisphaerica | exon |
| TCONS_00044125-exon-sc0005013-1575043694:648..788 | TCONS_00044125-exon-sc0005013-1575043694:648..788 | Clytia hemisphaerica | exon |
| TCONS_00044125-exon-sc0005013-1491911889:1522..2533 | TCONS_00044125-exon-sc0005013-1491911889:1522..2533 | Clytia hemisphaerica | exon |
| TCONS_00044125-exon-sc0005013-1510915933:1522..2533 | TCONS_00044125-exon-sc0005013-1510915933:1522..2533 | Clytia hemisphaerica | exon |
| TCONS_00044125-exon-sc0005013-1575043694:1522..2533 | TCONS_00044125-exon-sc0005013-1575043694:1522..2533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005013 | supercontig | sc0005013:648..2533 + |
Blast
The following BLAST results are available for this feature:
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