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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044123 ID=TCONS_00044123|Name=TCONS_00044123|organism=Clytia hemisphaerica|type=transcript|length=694bp
GCTTTATGCAGTGGACTATAGGCTGCTATAGGTCTGTAAAATTGACGAAG
TTAACAACATTGCGtgcatttttttgttgttgttcagTTGCTGGTTAGTG
GTTAGTAGAATATGTATGCAAGTAACTGTGGCTTGTATTCttgaaaagtt
ttggaaactTCAATCTATAAAGAAGAAGTATATTCCAACTGCCTGATCCA
TATTCAATCATTGAAGTCCCAGGTGACGGGCATTGTATTTTCTATTCATG
GGAGATATCACTGACAGCATCTTCAACAAGCAAGTTCAAACCCACATATA
CATCTCTTTTGGATCTGGTGCGTATGGAATTCCTAACGAATCAAGACAAC
TACAAGCCGTTTTTCTTTGGACAAAAAGATTATAATGATGAAATCAAGCA
GACACTTGAGAATAAAAGTTACGCAAACTGTATTTCTGATATGATGGCTA
ACGCCTTATCAAATACAACTAAAACAACTGCAGTTGTTTGGGAGAAAGAG
AATGGTCAGCTGGTTCAACGGAACGTAATCATTCCAGCCTTAGACGCAAA
TCCAGTAAATGGAATCATTCACCTACACAAAGAAGGGCAGCATTTTGAAC
CTATTGTCAAGAGACAACAAAAAGAAATCTCAGACGCTTTGTCTAGCACA
CATGGCCTTTCATTACAGCAAACCCAAGCTTTATCCTCAATACG Run BLAST on NCBI protein sequence of TCONS_00044123-protein >TCONS_00044123-protein ID=TCONS_00044123-protein|Name=TCONS_00044123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MEFLTNQDNYKPFFFGQKDYNDEIKQTLENKSYANCISDMMANALSNTTK
TTAVVWEKENGQLVQRNVIIPALDANPVNGIIHLHKEGQHFEPIVKRQQK
EISDALSSTHGLSLQQTQALSSI Run BLAST on NCBI transcript from alignment at sc0005003:235..4545+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044123 ID=TCONS_00044123|Name=TCONS_00044123|organism=Clytia hemisphaerica|type=transcript|length=4311bp|location=Sequence derived from alignment at sc0005003:235..4545+ (Clytia hemisphaerica)
GCTTTATGCAGTGGACTATAGGCTGCTATAGGTCTGTAAAATTGACGAAG
TTAACAACATTGCGtgcatttttttgttgttgttcagTTGCTGGTTAGTG
GTTAGTAGAATATGTATGCAAGTAACTGTGGCTTGTATTCttgaaaagtt
ttggaaactTCAATCTATAAAGAAGAAGGTAGGTAGACACTTTTTAGCCT
TCATTTGTATATGGCTTGAAATTTGATTTGAGAAGAATGTGAGGCTGGTT
AATATTTTCTTGGCCTTGCTTTGTTTTAGCTAATGCTAATCTGTTCCATT
ctctccaaaaaaaattttctctagcTGCTGGCTTTAGTTCATTGATAGAG
TGAAGCAATCAATACCTAATAAGCATATCAATGGATTATATTTCATTTTA
CTGATAAATCCCACCTAGCATAACACTAGCTAACACACCATGCATATAAC
TTTTTATAATAAGTCTCTAGCATCTCCAAAGTCTcttctaattttaaatt
ttttgcctgCTGTGCTACCGTGAGATCAAGTAACTTGCaccagtggaggc
taacatgcatagccctcaaataaataacctggctggtcattaagatacaa
agttaaatcaaaacaaaaatggtagagtagagctgcaagcggagctgcgt
agttaatttttttttaaattttaaattttgctgcttttgaTTGGTCGGTT
ATTTGAtagctatgcaagtttccctccactgatgcaagttacccagcTTC
ACGGTGCTTTATACACCCAATGATATACTGTgggattgggtaacttgcat
cagtggaggccaACATGCAAAGtaagccctcaaatgaaagacctggctgg
tcattaaattaaatacaactacgcagctctgctcgcagctccgctcgcag
ctctactctaccatttttgttttgatttaattttgtattttgattaaacc
caatctcacggtactcaGGTCGGGGTGGGgtactaaattttcaaaaatta
cgagGGTCTCTATGACAGTCTAGAAAGTAATGCATGTATATGATAGATAT
ATATATCCGGCATAGACTTTGTATCTCACAGGCTTAGCCCAAAGTTATGC
TCAAAAAACCATCTGGTGCATGTTTCcttattttaaaagatttatgCAAA
AAGAGGAGAAAACTGAATAAATGCACTGCTTCTagtcaatttttccaaat
caaatTGTCATGCGTGCAGtggcaatatttttcaatattttttcttcgtc
aAATGACAccgacaaaaaaattaaaaaattgagattaCAGTAAATAAAGT
ATTGAgaaagtagaattttttttaaaattttagtaAGAACCAAATATANA
GGGGGGGGGCTATTTTTGTACCAACCAAAAACTTTTGGTAATAACTCATG
AAATATAAAAGCTATGTCAACGAAATTTTGTGAGTTTTCCTAAATTTTAT
ATAGCATCAATATAAAACACATTTCATCCCCTTATTAtcttcacaccttg
agcatgatgacaagCAGGTGTCAAAAAGATATGGCACATTTTTTGCGTAA
TTGCccttttaatgtcaaatatatatatatcatttaaatacaaattttat
gaataatttaaagaaaaaggtcatTTTTATCTATTAATTCTTTTCTGTAC
TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatccaa
cgattcacgatgcgcgatgcacgatccatgcatatattatgttaattatt
ctaattatgcacgaataagttttcataatactagctacaaacatcatata
acaataacgaaaaaaaaattaaaaaaagaagggaaaataatttatcataa
tcagaatgattaaaataactttatatcttctgtgtagaaaaaccaaaaat
tgatagtgagagaaagaaaatgttcgcCGCATGCCTCACTCGtttataaa
atgaaagaaaaagccttgacgtcatagaaaagttttggcgcgGAAAATTT
ATTACTTTTGATGATCAAGTCaattcatttgatctttctcaaaaaatgtg
agtttatacacgcgctcttcattaaaaaacgtcttccctactttaccaca
acattataaatttttgtttataaccctgtctcaatccaatgcatttggtt
ggtttaatcggagaaacgtttttttttttaagaaagaaagcaaaaaggtt
acaagatattcaattcaaggcatgggcaaaaaagtttatgttttgatttg
atttgagtgtcgaggttaaaatatatacacgcatgctttacattgatttt
ccaggaatacaaaagaaggaattaagatatgtgattactaaaacctgtaa
atccataattagaataattaacataatatatgcatggatcgtgcatcgtg
catcgtgaatcgttggatcgcgcatcgtgaattaCACAAACCGGGATCAG
AAGTTAAAAATTAGTTAAAAAATCATGCACACTCTATTACACTCAGACCC
TAGAATACTAGTGAATTTCAGCTTAATTGTAAGGTTTTCAAACTTCTGCA
TTTGTACACAGATTGattgtaaataaatagaaatATTGTTACAGGTTATT
AGCAATTCTTTATTCAATGCTTTCCAGATAATATACAGTGATAAGAAAAA
CGTTAGCTATATTGTTATCAAGCAAAAATGTCATTTCAACAAGAGAggta
attttttagtttttctttactttttggcTAATTGGTTAAACATGTTTAAA
GCATACAGTAATGCCCAATTTTGCAAGAATGGTTAAGTTTAGTGAGCCAA
GCCGAGTGCTTTTTATTAAAGAAATGCTACATTACCATGTAAATAGTGAC
TAGGTTGAATCTTTGACAGGGTTTCATAAAAGACTTTTGAGATtgaaatt
cttgatattttgatttctttatattctaatttttcaattttttttaattt
ttaaaataagaaaagctgtcttatttttagaatttctatGGCATTATAGT
TGGTCTTCTGATGGAATTATTTTTAGGGTGACCATATTTTTCGTATCCTA
TTCCTGTTAGCAAAAGAGATAAAGAGAAGAAATTAGCTTGAAAATACTTA
TCATCAAAACCAGTTAATTTGCTGGATAGGGAGAGGAACTTTTCTTtgca
attataaattataaagaTTATTTTGTACTGTATAGTTAGAAAGTGCACTT
TAATCCAATCGATCcaatatatatttcaaaaattctaaaagaagAAAGGT
GAAATTTTGGATTAcataaataattttcaaattatgtaatttttaatttt
ccaaacctgtgaatgaAATTTAGCAGGCGAGTtatactgaaaaaaaattt
tcacccgTCTGGTAACACAGAAACAAGGAATTTTTTAGGAACGACTTTAA
AGAAGATCTGAATATTATTTCTGATATTTATCCTTGTAGTATATTCCAAC
TGCCTGATCCATATTCAATCATTGAAGTCCCAGGTGACGGGCATTGTATT
TTCTATTCATGGGAGATATCACTGACAGCATCTTCAACAAGCAAGTTCAA
ACCCACATATACATCTCTTTTGGATCTGGTGCGTATGGAATTCCTAACGA
ATCAAGACAACTACAAGCCGTTTTTCTTTGGACAAAAAGATTATAATGAT
GAAATCAAGCAGACACTTGAGAATAAAAGTTACGCAAACTGTATTTCTGA
TATGATGGCTAACGCCTTATCAAATACAACTAAAACAACTGCAGTTGTTT
GGGAGAAAGAGAATGGTCAGCTGGTTCAACGGAACGTAATCATTCCAGCC
TTAGACGCAAATCCAGTAAATGGAATCATTCACCTACACAAAGAAGGGCA
GCATTTTGAACCTATTGTCAAGAGACAACAAAAAGGTATGCACTTTTCAT
TCTTGATTTTATAACATTTAGTTTCTCTCATATGTTCTATAGGGGGACAG
TTTTTCCCAACACtttatttttgtctgaaaacattataaaaaaatatcca
aaaaaacaaataaagcttaacaaattttgaaaaacaattctCATTTGGGA
TTTTATGATTCCAAGTATTTTCCTCAGTGGAtacataaaatcaaaaatct
gcAATTCTTCCACCTGTGATGTCATATATGACGTGTAACAAAGCAGAACA
AAGATTGAAGTCTGTTTATAAgagtttattaaaaaaaaagagttgaataG
TGCAGAAGTTAAGAAGGCAATCTTATATCTTCTCTGTTTAGAAATCTCAG
ACGCTTTGTCTAGCACACATGGCCTTTCATTACAGCAAACCCAAGCTTTA
TCCTCAATACG Coding sequence (CDS) from alignment at sc0005003:235..4545+ >TCONS_00044123 ID=TCONS_00044123|Name=TCONS_00044123|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0005003:235..4545+ (Clytia hemisphaerica)
ATGGAATTCCTAACGAATCAAGACAACTACAAGCCGTTTTTCTTTGGACA
AAAAGATTATAATGATGAAATCAAGCAGACACTTGAGAATAAAAGTTACG
CAAACTGTATTTCTGATATGATGGCTAACGCCTTATCAAATACAACTAAA
ACAACTGCAGTTGTTTGGGAGAAAGAGAATGGTCAGCTGGTTCAACGGAA
CGTAATCATTCCAGCCTTAGACGCAAATCCAGTAAATGGAATCATTCACC
TACACAAAGAAGGGCAGCATTTTGAACCTATTGTCAAGAGACAACAAAAA
GAAATCTCAGACGCTTTGTCTAGCACACATGGCCTTTCATTACAGCAAAC
CCAAGCTTTATCCTCAATAATGGAATTCCTAACGAATCAAGACAACTACA
AGCCGTTTTTCTTTGGACAAAAAGATTATAATGATGAAATCAAGCAGACA
CTTGAGAATAAAAGTTACGCAAACTGTATTTCTGATATGATGGCTAACGC
CTTATCAAATACAACTAAAACAACTGCAGTTGTTTGGGAGAAAGAGAATG
GTCAGCTGGTTCAACGGAACGTAATCATTCCAGCCTTAGACGCAAATCCA
GTAAATGGAATCATTCACCTACACAAAGAAGGGCAGCATTTTGAACCTAT
TGTCAAGAGACAACAAAAAGAAATCTCAGACGCTTTGTCTAGCACACATG
GCCTTTCATTACAGCAAACCCAAGCTTTATCCTCAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044123-exon-sc0005003-1491911889:235..412 | TCONS_00044123-exon-sc0005003-1491911889:235..412 | Clytia hemisphaerica | exon |
| TCONS_00044123-exon-sc0005003-1510915933:235..412 | TCONS_00044123-exon-sc0005003-1510915933:235..412 | Clytia hemisphaerica | exon |
| TCONS_00044123-exon-sc0005003-1575043694:235..412 | TCONS_00044123-exon-sc0005003-1575043694:235..412 | Clytia hemisphaerica | exon |
| TCONS_00044123-exon-sc0005003-1491911889:3674..4119 | TCONS_00044123-exon-sc0005003-1491911889:3674..4119 | Clytia hemisphaerica | exon |
| TCONS_00044123-exon-sc0005003-1510915933:3674..4119 | TCONS_00044123-exon-sc0005003-1510915933:3674..4119 | Clytia hemisphaerica | exon |
| TCONS_00044123-exon-sc0005003-1575043694:3674..4119 | TCONS_00044123-exon-sc0005003-1575043694:3674..4119 | Clytia hemisphaerica | exon |
| TCONS_00044123-exon-sc0005003-1491911889:4476..4545 | TCONS_00044123-exon-sc0005003-1491911889:4476..4545 | Clytia hemisphaerica | exon |
| TCONS_00044123-exon-sc0005003-1510915933:4476..4545 | TCONS_00044123-exon-sc0005003-1510915933:4476..4545 | Clytia hemisphaerica | exon |
| TCONS_00044123-exon-sc0005003-1575043694:4476..4545 | TCONS_00044123-exon-sc0005003-1575043694:4476..4545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005003 | supercontig | sc0005003:235..4545 + |
Blast
The following BLAST results are available for this feature:
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