TCONS_00044106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044106
Unique NameTCONS_00044106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044106 ID=TCONS_00044106|Name=TCONS_00044106|organism=Clytia hemisphaerica|type=transcript|length=314bp
CTGTTTGACGTGTGTGTAAGCTATGGTTATCTGGTATCGAGTAATTTAAC
AAATTCGTGTAGTACATTCTAGAGccacaaacaaaaaacacacataTAAA
GATCATCATAGTTTCAATGAAATATGTACCGAAAGTCTTTGGTTGTCCAT
CTTTTATACTTCTTGGTAATATTACTGACTGTTGGAAAAGTTGATGCTCA
GCAAAAAACTTGCAGATTATCAGGTATTTGTACGTACACATGTCAATTAA
ATGAAGATTGTTTCTTCAGAGCATGCACAGCCTCGATAGTCACATTCAAG
TGCCAATCAGGTAA
Run BLAST on NCBI

transcript from alignment at sc0004977:121..3985-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044106 ID=TCONS_00044106|Name=TCONS_00044106|organism=Clytia hemisphaerica|type=transcript|length=3865bp|location=Sequence derived from alignment at sc0004977:121..3985- (Clytia hemisphaerica)
CTGTTTGACGTGTGTGTAAGCTATGGTTATCTGGTATCGAGTAATTTAAC
AAATTCGTGTAGTACATTCTAGAGCCACAAACAAAAAACACACATATAAA
GATCATCATAGTTTCAATGAAATATGTACCGAAAGTCTTTGGTTGTCCAT
CTTTTATACTTCTTGGTAATATTACTGACTGTTGGAAAAGTTGATGCTCA
GCAAAAAAGTAAGTACTGATTCTCAAGAGCAGGATATTATCTTGAGTGGT
TCTGGGTGAGGGTAACCATGTTGCAAGGTGACCGGTACAAGCCGCCTGCT
TTTCACCCATGGATCATAGCGAGACTAAGAAGGAAGAAAAAAATAAGATA
AGCTTTGTGAATTTCACGATCCTTAGGGACTGATTTTTCCACATTTCTAT
TTGATCGATATGAATTTTCCTATTTTTCAGATCTTTTCAGAGAAACTAAA
GTCTATTCACGATAAGTGTGCACTCTTTTTTCTTTTACTACCTATAACTT
TTGAAGGAATTCGTCAATCTTTACAAATTTGGTGTCATTGAAAAGATATT
AGTGAGTGGAACAATTTGAAATAAAAAAATCTTCTAAAAAATTCTGAAAA
TGAAGATGAAAATGAAGAAGAAAAAAACAGAGATCATGTAGAAAAGTGCT
ATAACTATCATTTTCACTGAAGCGAAACCTTGATTATCGAACGTCATCAC
TGTGAAAAAATTTCTCAAAAATAATCATTCAATCAAAAGATATCAAACAA
AGTTATAAGCTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATCACTTATTAACTTTGTATCATAACTTTGTATTGAATAAATAT
TTTAGTGAAATTTCTTCACAGTGATGACCTCCAAAGATCAAAAAATCCCT
CAAGTGAAATTGAAAGTTATAGCACTTTTCTACAAGATCTTCGTTTTTTC
TTCTTCATTTTCATCTTCATTTTTAGAATTTTTTTGAAGCTTTTTTTATT
TTAAATTGTCCCAATCACAAATATCTCTCCAACGATACCAAATTTATAAA
GATTGAAGAATTCCTTCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACA
CTTATCGTGAATAGACTTTAACATTTAATATTCCTATTTATCGGACCTCT
AGAAGGACCCAAAAAGGTACCCTTAAGGAAGGGTGCCATATACCCGTACC
TTCACTTGCTTAGGTAACACTCGGGGCGTTTCCATATGTTAAACAGGGTT
TACCATATAAGATTGATTCAGAATTAGACTCTTAACCTTTTCAGCCCGTC
GGACGAGTATAGTCGTCGAGCATACGTTCCGGCGNCTTAATGGACAGCTC
GATACAGCTCGATCAAATTTTTATAGAGTTTTTTTAAACAAGAAAATAAT
GTTTGACCTGCTAGAGTTTATTTTTAAGTTTTTATCAAGTTATGAGAAGT
TCGACCAAACATTTCATAGACTTGCTACTTTTGCTATTAACATTCTTTTG
AATATCTATATTTGTCAAGTCTGTATTCATTAGTTCTAACAGAGATGTTA
AAACAACACTTTTTCTATCTTGAACGAAACTGGCGCTAAACTGTCTTTAC
CTGGTTGATCATCAATCGATTAAATTTCGTCATGTGAGTGTAGTAAGAAG
AAATTTGTAAATTATAAGCGGAGCTTATCTTAAGTTATTTCTAATCTTCC
ATGATGAACCAGAACATTCACTACACGGCCGCTTCCTAAATCGCACAACT
ATCCATTAAACCTTTTAGGGCTTTTAAAACGGCTTTTAGGGGTGGTTCAG
AACTAGGGGGGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGATCTAG
TATGTCTTTTTGGATGAAATTTGGCACACAAGATCCTTGTGACGTAAGGT
AACTTTTGACAAATTTTTTTTTGATGACGTCACTCATCATGCCCAAAGTG
AGCAAAATCCAAAAATGTCCTTTGTTCTTATAAATAGCTATTGTATTCTA
ACAAAGGCTTTAGAAAAAAGTTGCCCGAGTTTAAAATGCTTATTTTTATC
CTAAATATTCAATAAATTACGGTTTAAACGATATATTTTACATTGAAAAT
AAATTTGTATTGGGAAAGTATCAATTTTTGTGACACCTTTTTGTCAGAAA
TGCCATCATGCTCAAGGTGTGAAAATATTTAGGTGTCAAATTTTTTTTAT
TTTGAAGCTAAATAAAAGTTAGGAATTTACAGAAAATTTCATGGCAAAAG
CTCTATTATTTAAGGAGCTATTACCAATAGTTTGACCTCCGAACAGAAAG
AGCCCCCCCCTAGGCCGAATAGGGTTAAGAAGGGATGGCGAGTGGTCGAG
CGCCTTCTCTGAATCCTAAATAGCTAAGAATGTGAATTTCGCAGTAGCTT
GTTACAGTGAGATTTCCCCTATAATGAAGTTATTTCAATCTTTTGAACCT
CTGATAACTTTAGTTTAAGCGGGATTTGCAATCTTATCAATCTTAACTTT
AAAGTTAAAATTTCATTGGCCTTCTATGAAGAATTTCGTTTAGTTGATAA
AAGAGCTCAAAGCTATAAAAGAGAAATAGTATTGAAAGTTATGGCATGTT
TTTTAGGATTTTGATTCAAGTTCAATTTTCTTCTAGCTTGCAGATTATCA
GGTATTTGTACGTACACATGTCAATTAAATGAAGATTGTTTCTTCAGAGC
ATGCACAGCCTCGATGGTCACATTCAAGTGCCAATCAGGTAAGACTTAAA
GATTGTCTAAGAGTTTAAGAGNATGGAAATTTTATACCTAGTAAGTCGAT
TTAGTCTATATTTTTGCTTTCTAAAACTGTTATCAGAAAAATTACCTGAT
AATCTTAAAACTTTTGCGCCGCTAGTCTTACTTTACTTTCCATTAATGAT
CATGGCTGAAAGAGCCCCCAAAAATGCAGAAGTTGGGAAGAAGGGTTCGT
GCAAATTTTGGCGCCGCAGGCAAAAATCTTTGGTGTCAGAAAGGTCAAAC
AGCTTAAAAGATCTTCTAAAACGTTAGTCAGTATAAGACCCCAAAAACCA
CAGCGAGAATCAACAAGTTTTGATCATTTTGGCAATCTCTCATTTTAGGG
GTGAAAATTTGTAACTAGGGGAAAGTGAGCAATAAATTTGTTCGAGTTTG
CTAAATAATGTTAAATTTCTCTTCTTGCAACAAGACTTAGATGTCGAATG
AAACAACAGCCGCCATCTTGGGTATCCATCAAAACTGACTTTCGTATCCG
TCAAAGAAACATTTCTAGCGGTCGCAGAAGAGCACTCTCATACACCCAAT
TCATAAGGGCGACACATTCTCTTTAACCCCTGGTGGATACACAACACTTC
TCTTACTTCTGATTCAATATTGATAGAAGTTTAGAAAAAATTCAAGAGAA
AGGATGCAAGAGGTTAAATTAAAAAAAAATTATCATTGTACTCATAGAAG
GCGCTATAAACGTGCCGAAGGGCGCCAAATTGCCTAGTTAAACATCGACA
AAATTTTGGCGCCCCCTTGAAAAGCTCTTTTGGCGCCCCTCTCAGATCTT
TCTGGGTGGTGCACTGCACACCCTGCACCCCCTGCCAGGCCGCCACTGGT
TNNNNNNNTTTTGGCGCCCCCTTGAAAAGCTCTTTTGGCGCCCCTCTCAG
ATCTTTCTGGGTGGTGCACTGCACACCCTGCACCCCCTGCCAGGCCGCCA
CTGATTGAAAGTTATGGCATGTTTTTTAGGATTTTGATTCAAGTTCAATT
TTCTTCTAGCTTGCAGATTATCAGGTATTTGTACGTACACATGTCAATTA
AATGAAGATTGTTTCTTCAGAGCATGCACAGCCTCGATAGTCACATTCAA
GTGCCAATCAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027754XLOC_027754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044106-exon-sc0004977-1575043694:3778..3985TCONS_00044106-exon-sc0004977-1575043694:3778..3985Clytia hemisphaericaexon
TCONS_00044106-exon-sc0004977-1575043694:121..226TCONS_00044106-exon-sc0004977-1575043694:121..226Clytia hemisphaericaexon
TCONS_00044106-exon-sc0004977-1510915933:3778..3985TCONS_00044106-exon-sc0004977-1510915933:3778..3985Clytia hemisphaericaexon
TCONS_00044106-exon-sc0004977-1510915933:121..226TCONS_00044106-exon-sc0004977-1510915933:121..226Clytia hemisphaericaexon
TCONS_00044106-exon-sc0004977-1491911889:3778..3985TCONS_00044106-exon-sc0004977-1491911889:3778..3985Clytia hemisphaericaexon
TCONS_00044106-exon-sc0004977-1491911889:121..226TCONS_00044106-exon-sc0004977-1491911889:121..226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004977supercontigsc0004977:121..3985 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.382468	0	1.3666	1.07991	1.30286	0.813149	0	0.352588	0	0	7.86297	5.83269	0.767242	2.26335	1.2679	3.37886	18.6723	24.0483	4.81083	10.5595	1.93654	2.11271	5.07744	8.41564	0.463183	0	0	0.381989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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