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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044102 ID=TCONS_00044102|Name=TCONS_00044102|organism=Clytia hemisphaerica|type=transcript|length=932bp
GTTTCAAACAAGCGTAGAACCAACACGTCAGTCGTAAATGGCTAGAAACA
ACAAGTTCAATAAAAAACAAGGTGGGGAGAACACCTCTAAACTTCCACAG
GACACTTCCCAACTCAGTGAGGACACTTTTAGTACTCAGGATCGAGACAT
TCCAATGAGTCAACCCCAGCCAGAGATGGAAGCAGAAGCATTTGATGACA
TTCCATCAAGCCAACGAGAGTTAAAGGCAGAATCAAACTTCTCAAATGCA
GACACAGCTTTCCAAGATTCAAATGCAGGCCCTTCAACACCTACAAAATC
AATGCGAGTGGCGTCAACACCTAGACAATCAACGCCAAGCCCGTCAACAC
CAAAGAAACGTGGGTTAGAGGACACATATCatggttttgttttaaaatta
acAAATGTTACGACAGCTGGGTCACCGTCTAAATCGAAATATTTCAGAGC
AACACTGCATGACGGAGAAGATTTGAAATCAGTTGTTTCGTACAATCCAA
ACCTTCATCCAGTGATGAAGAAGGCAAAGTTGACAGACCAACCTGTCAAA
ATCTCTCAATTCACAGAAATTGTCAACAGCTATGACCATACAAAAGACTT
CAAATTGGGCAACCATTCAACAGTGGAACTTTCTTCGGCCCCGTTATCTT
TTGACCGAGTGAAAAATTTAATCCAAGAGTCCACCTCTATGACCAACATG
ATTGATGCTATTGACCAAGCTGTAGGTGATTTTGTCAACGTGGAAGTGTA
TGTAGAATTGGGTGACTCCACAATCGAAGAAGTTCCAACCAGATATGGAG
TTAAAAGGAAACGCGAAGCTCTTATTCATGATGCATCATGCAGCGTTCCA
ATAAGGTTCGCCATTTGGAATGCTCACATTGATGCCATGCCTACAAGTGG
ACCCTACAGGCTCATGGATGTGAAGATCAACA Run BLAST on NCBI transcript from alignment at sc0004972:4..1992- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044102 ID=TCONS_00044102|Name=TCONS_00044102|organism=Clytia hemisphaerica|type=transcript|length=1989bp|location=Sequence derived from alignment at sc0004972:4..1992- (Clytia hemisphaerica)
GTTTCAAACAAGCGTAGAACCAACACGTCAGTCGTAAATGGCTAGAAACA
ACAAGTTCAATAAAAAACAAGGTAATTTTTGAATTTACAATTAGTAATTG
AATCATTAATCGAAATTGAATATCATTCATCGTGGATTTTCAAGTTTCTA
AGCTTTCTTGGGCATTAAACTATGATTTTTTTTGAGGAAAGAAAATCCTC
TTGACAAATCAAATTTCTAAACCCAAATAATTACTTCATAGGTGGGGAGA
ACACCTCTAAACTTCCACAGGACACTTCCCAACTCAGTGAGGACACTTTT
AGTACTCAGGATCGAGACATTCCAATGAGTCAACCCCAGCCAGAGATGGA
AGCAGAAGCATTTGATGACATTCCATCAAGCCAACGAGAGTTAAAGGCAG
AATCAAACTTCTCAAATGCAGGTATATCATTATGAACGTGCACATTCAGA
CACTGTAAAAGCTAACATTAGATTAGGTCCCTTCCCTTTAGAGGGGGAGT
GGGGCAGGCATCGTTATTCTCAATTTCCTTGACATCTCTTGACCTGGCTA
GTAGGTTGTGATCCTGGGACAATTCATTATCCTCTTGTTCCCCAGAAGTT
ATGTTGGCTAAACAAATTTCATTTGGCATTAGGTTTTCAGAGGGAATTAT
ATTTGATTGATTCACCATAATTAATTTTGTTGAGAATTTAATTTCAAGGA
TGCTAACAGGTATCAAGGTTCAATTTCAAAGTGAAAATGTAAAATACACT
TATTTTTCAGTGTTGTTTATTACCCTTGAAAAAATTTTCACCGAAATTCC
TTTTTGTGAGTATGGGGAAAAGAAATGTCAAAACCCTTTTTAAAGGTCCC
CTGATGGAAAAACTAAACAAAATGACACAAAATACGTATATTGGATTTTA
TTAATACAGGTATAATTAAATTACAGACACAGCTTTCCAAGATTCAAATG
CAGGCCCTTCAACACCTACAAAATCAATGCGAGTGGCGTCAACACCTAGA
CAATCAACGCCAAGCCCGTCAACACCAAAGAAACGTGGGTTAGAGGACAG
TAAGTCTTGATGCTATAACAGTCAATTTCTTAGAAAAAGAAACATTTTAA
TTTTAGCTTACATCATGTTACTCAAATTTCTTCACATAAACTCATCAGCA
GCTATGTAAAACGAATAAATGCATCATTAATTTTCTCTACAATGACTCCC
TTGTCAATTATGTATCACTTATATATACTAAAATTTCTAGGATTTAGAAG
AGGGGTTTGTTGCTCACACTGTAGGCGTTTTGAAACTGAATTTTCAAAGA
AATTCCAAACATTTTATTAATAAACATCTTTTAGGTTGGAAATTAACACC
TCCCCTCCTACAATTAAGCATAGAAGAGTACTTTGTGCTTTTCAGACTTT
CATGCTTGTTCTCATTCTGCTTTTTTTACAGCATATCATGGTTTTGTTTT
AAAATTAACAAATGTTACGACAGCTGGGTCACCGTCTAAATCGAAATATT
TCAGAGCAACACTGCATGACGGAGAAGATTTGAAATCAGTTGTTTCGTAC
AATCCAAACCTTCATCCAGTGATGAAGAAGGCAAAGTTGACAGACCAACC
TGTCAAAATCTCTCAATTCACAGAAATTGTCAACAGCTATGACCATACAA
AAGACTTCAAATTGGGCAACCATTCAACAGTGGAACTTTCTTCGGCCCCG
TTATCTTTTGACCGAGTGAAAAATTTAATCCAAGAGTCCACCTCTATGAC
CAACATGATTGATGCTATTGACCAAGCTGTAGGTGATTTTGTCAACGTGG
AAGTGTATGTAGAATTGGGTGACTCCACAATCGAAGAAGTTCCAACCAGA
TATGGAGTTAAAAGGAAACGCGAAGCTCTTATTCATGATGCATCATGCAG
CGTTCCAATAAGGTTCGCCATTTGGAATGCTCACATTGATGCCATGCCTA
CAAGTGGACCCTACAGGCTCATGGATGTGAAGATCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044102-exon-sc0004972-1575043694:1922..1992 | TCONS_00044102-exon-sc0004972-1575043694:1922..1992 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1575043694:1572..1751 | TCONS_00044102-exon-sc0004972-1575043694:1572..1751 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1575043694:944..1066 | TCONS_00044102-exon-sc0004972-1575043694:944..1066 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1575043694:4..561 | TCONS_00044102-exon-sc0004972-1575043694:4..561 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1510915933:1922..1992 | TCONS_00044102-exon-sc0004972-1510915933:1922..1992 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1510915933:1572..1751 | TCONS_00044102-exon-sc0004972-1510915933:1572..1751 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1510915933:944..1066 | TCONS_00044102-exon-sc0004972-1510915933:944..1066 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1510915933:4..561 | TCONS_00044102-exon-sc0004972-1510915933:4..561 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1491911889:1922..1992 | TCONS_00044102-exon-sc0004972-1491911889:1922..1992 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1491911889:1572..1751 | TCONS_00044102-exon-sc0004972-1491911889:1572..1751 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1491911889:944..1066 | TCONS_00044102-exon-sc0004972-1491911889:944..1066 | Clytia hemisphaerica | exon |
| TCONS_00044102-exon-sc0004972-1491911889:4..561 | TCONS_00044102-exon-sc0004972-1491911889:4..561 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004972 | supercontig | sc0004972:4..1992 - |
Blast
The following BLAST results are available for this feature:
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