TCONS_00044057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044057
Unique NameTCONS_00044057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044057 ID=TCONS_00044057|Name=TCONS_00044057|organism=Clytia hemisphaerica|type=transcript|length=367bp
TTTATGAGAAAACGGTAACCCTGATTGGCCAAACGGTCAACAATCTCCTA
TATCAACGGCGCTTCAATGCCCTCAGTGCTCTTTTTAATGACAAGAAGAA
AGCCAAGTCCATGATCAAGGAACTCAAAGAATTAATAAACAATGATGATA
CCTACCTATTTGGGGACAAATTTGAGGAGAAAGTGATAAAAACacaaaag
atgaaaatcaaaacaaaacaagccTTGAAGGACAACAGTAACCAACAGCA
ATCAAGAAGGACCCCTCTCGGGGCCGCCTCCTTTCCAACCGATCGAGGGG
AAGGGGGCGTGGAGGTTTTAACTCATACTATCGATCTTTCCAAACAGACT
CAagtaacaacaacaac
Run BLAST on NCBI

protein sequence of TCONS_00044057-protein

>TCONS_00044057-protein ID=TCONS_00044057-protein|Name=TCONS_00044057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
YEKTVTLIGQTVNNLLYQRRFNALSALFNDKKKAKSMIKELKELINNDDT
YLFGDKFEEKVIKTQKMKIKTKQALKDNSNQQQSRRTPLGAASFPTDRGE
GGVEVLTHTIDLSKQTQVTTT
Run BLAST on NCBI

transcript from alignment at sc0004894:4035..4401

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044057 ID=TCONS_00044057|Name=TCONS_00044057|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0004894:4035..4401 (Clytia hemisphaerica)
gttgttgttgttactTGAGTCTGTTTGGAAAGATCGATAGTATGAGTTAA
AACCTCCACGCCCCCTTCCCCTCGATCGGTTGGAAAGGAGGCGGCCCCGA
GAGGGGTCCTTCTTGATTGCTGTTGGTTACTGTTGTCCTTCAAggcttgt
tttgttttgattttcatcttttgtGTTTTTATCACTTTCTCCTCAAATTT
GTCCCCAAATAGGTAGGTATCATCATTGTTTATTAATTCTTTGAGTTCCT
TGATCATGGACTTGGCTTTCTTCTTGTCATTAAAAAGAGCACTGAGGGCA
TTGAAGCGCCGTTGATATAGGAGATTGTTGACCGTTTGGCCAATCAGGGT
TACCGTTTTCTCATAAA

Coding sequence (CDS) from alignment at sc0004894:4035..4401

>TCONS_00044057 ID=TCONS_00044057|Name=TCONS_00044057|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0004894:4035..4401 (Clytia hemisphaerica)
tgttgttgttactTGAGTCTGTTTGGAAAGATCGATAGTATGAGTTAAAA
CCTCCACGCCCCCTTCCCCTCGATCGGTTGGAAAGGAGGCGGCCCCGAGA
GGGGTCCTTCTTGATTGCTGTTGGTTACTGTTGTCCTTCAAggcttgttt
tgttttgattttcatcttttgtGTTTTTATCACTTTCTCCTCAAATTTGT
CCCCAAATAGGTAGGTATCATCATTGTTTATTAATTCTTTGAGTTCCTTG
ATCATGGACTTGGCTTTCTTCTTGTCATTAAAAAGAGCACTGAGGGCATT
GAAGCGCCGTTGATATAGGAGATTGTTGACCGTTTGGCCAATCAGGGTTA
CCGTTTTCTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027709XLOC_027709Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044057-proteinTCONS_00044057-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044057-exon-sc0004894-1491911889:4035..4401TCONS_00044057-exon-sc0004894-1491911889:4035..4401Clytia hemisphaericaexon
TCONS_00044057-exon-sc0004894-1510915933:4035..4401TCONS_00044057-exon-sc0004894-1510915933:4035..4401Clytia hemisphaericaexon
TCONS_00044057-exon-sc0004894-1575043694:4035..4401TCONS_00044057-exon-sc0004894-1575043694:4035..4401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004894supercontigsc0004894:4035..4401 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.214089	0.254239	0.248733	3.03558	0.786015	1.88981	1.90213	0.378436	0.531786	1.36495	0.332601	0.746681	0	0.669799	0.68415	0.198629	0.499419	0	0.499552	0.295982	0.735832	0.447471	0.234065	2.60222	0.927088	1.09944	0.469956	0.103216	0.386496
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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