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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044041 ID=TCONS_00044041|Name=TCONS_00044041|organism=Clytia hemisphaerica|type=transcript|length=727bp
tttttcagctttcaaaggAAGATTATGCAGTAGTGTTAGTTGGTGGTGGA
AGCATTTTAATTGATGTCAACAAAACTTTCGCTGGAGCTTCCAAAATCAT
CAAACCGCCCTTCTATCAGGTCGCAAACGCAGTCGGAGCAGCTTTGAGTC
AAGTCAGCGGAACTTTCGACAAATTAATTGAAATGAACGATGATCAAAAC
ACACGGCAGACGATCCTCCAACAAGCAAAAGATTACGCTATAGAGCAGGC
TGTTCAAAATGGCGCCATTCGTAGCACCTGCGCCATCTTGGATATTCAAG
AGATTAACATGACGTACGTAGCTCTACCTCGTAAACGTCTTACTGTGAAA
GCGGTTGGAGATCTACAAGACGTTTCAACGGAAACAAACGTGGAGAGAAC
ACAAAAAGGATCAGGAGACGTTCGTTTTGAAAATAACGATCatgcaaaag
aaaagaaaaaatctaatgagAAGCCAGaaacCGAACTTCAACAAACCACT
GATGAAAACCAACCTCGCACCAGTCCTCAAACAACAATAATAGAGGATTA
CAAACCACACGTCAATGAACAAGGGGAATGGGAACTAAGTTTGTATGATG
TTGAATGTTTGGCGTTAGGAGCGGGCGTTCTTGGGTGTGGAGGTGGTGGT
AGCCCGTACTTGGGAAAAATGGAATTGTTGAGATGTATCGAGGACGGTTT
TACACCAAGGATTATTCACCCTGAAAG Run BLAST on NCBI protein sequence of TCONS_00044041-protein >TCONS_00044041-protein ID=TCONS_00044041-protein|Name=TCONS_00044041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
FQLSKEDYAVVLVGGGSILIDVNKTFAGASKIIKPPFYQVANAVGAALSQ
VSGTFDKLIEMNDDQNTRQTILQQAKDYAIEQAVQNGAIRSTCAILDIQE
INMTYVALPRKRLTVKAVGDLQDVSTETNVERTQKGSGDVRFENNDHAKE
KKKSNEKPETELQQTTDENQPRTSPQTTIIEDYKPHVNEQGEWELSLYDV
ECLALGAGVLGCGGGGSPYLGKMELLRCIEDGFTPRIIHPE Run BLAST on NCBI transcript from alignment at sc0004874:3121..5031+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044041 ID=TCONS_00044041|Name=TCONS_00044041|organism=Clytia hemisphaerica|type=transcript|length=1911bp|location=Sequence derived from alignment at sc0004874:3121..5031+ (Clytia hemisphaerica)
tttttcagctttcaaaggAAGATTATGCAGTAGTGTTAGTTGGTGGTGGA
AGCATTTTAATTGATGTCAACAAAACTTTCGCTGGAGCTTCCAAAATCAT
CAAACCGCCCTTCTATCAGGTAATTCCACTCTTCTAACAGCAAAGTACCT
CCaccggtttgcgtgaatgcgtgaatgggctttttcacttgcgtgaatgc
gtgaaaattaaaaaaggttgcgtgaatgcgtgaattggaaagctttgcgt
gaacaaaatttgcctgattgcgtgaattgaaggtccgctgtGTGGCCTCA
TAACACCAATATTATCTAGTACTTTCATTATAGCTTTTCATgtttgttaa
gttacgtaacttccgccattatggaagcaaacgttcgatttgcgtaagag
ATCGCCTTCTatagattcgaatgttttcttcgACAATGGTGGTAATTACG
TAACTTACCTAACCTATAGAACATACCCTTATCAAGTTTTGAACGAGAAT
ATATGATTTTTTGAGAGTCTGTTCTACTCAAGGTATACCAGGTTTtatca
ttttccaaatttcagtTTAGATTCAGTTTATCTATTTTCCTACTTAAAGG
TCGCAAACGCAGTCGGAGCAGCTTTGAGTCAAGTCAGCGGAACTTTCGAC
AAATTAATTGAAATGAACGATGATCAAAACACACGGCAGACGATCCTCCA
ACAAGCAAAAGATTACGCTATAGAGCAGGCTGTTCAAAATGGCGCCATTC
GTAGCACCTGCGCCATCTTGGATATTCAAGAGATTAACATGACGTACGTA
GCTCTACCTCGTAAACGTCTTACTGTGAAAGCGGTTGGAGATCTACAAGA
CGTTTCAACGGAAACAAACGTGGAGAGAACACAAAAAGGATCAGGAGACG
TTCGTTTTGAAAATAACGATCatgcaaaagaaaagaaaaaatctaatgag
AAGCCAGGTAAagctaacctgagatcagattgtgatcgTTTTcggcccac
cacgctgaagctctaaagggattggtgaaaacataacaatctgccGAATA
TGCTttctcaaaatcgtaaggaccgcactcgtctaaaaggactgggaatg
acttTCCggtgcacaacaagattcttgttgtagaattttccgcgggaggg
cTATATTAAAGGACCTTCAGAGGTTTTTACCGTGTGCGTAAGAAAATTAC
AACCACATTACAATATCATTCCTCTCGGATGGCAAATTGACCCGCACCTA
TAGAGCTTTAGCATGGGAGGCCGCCATTTAATTGACAGACTTTTGCTCTA
ATTCAACATGACATCATGATAAGGAAAAGTTCTTTTTAACACCTGTTGAG
TCAGACAATTTTCAATGACAAGACGACTTCTTATCGGTGCGCTGTACAAA
AATATCGGATTCATTTTTGACATACTTTACaaaaatcctcatatcttctA
AACTAGATTAGCTATATTGATGAAGCTTTCAGGGAATGTTTGAAATAGGA
TATCGGTGGCATCTGTTTGAATGGTATAGCACAAGTAGCAAAGGCTACGT
CaaaatttcaattgtttttttttttggcacaTCCGgtatttctcttcttt
tttcagaaacCGAACTTCAACAAACCACTNGGCACATCCGgtatttctct
tcttttttcagaaacCGAACTTCAACAAACCACTGATGAAAACCAACCTC
GCACCAGTCCTCAAACAACAATAATAGAGGATTACAAACCACACGTCAAT
GAACAAGGGGAATGGGAACTAAGTTTGTATGATGTTGAATGTTTGGCGTT
AGGAGCGGGCGTTCTTGGGTGTGGAGGTGGTGGTAGCCCGTACTTGGGAA
AAATGGAATTGTTGAGATGTATCGAGGACGGTTTTACACCAAGGATTATT
CACCCTGAAAG Coding sequence (CDS) from alignment at sc0004874:3121..5031+ >TCONS_00044041 ID=TCONS_00044041|Name=TCONS_00044041|organism=Clytia hemisphaerica|type=CDS|length=2169bp|location=Sequence derived from alignment at sc0004874:3121..5031+ (Clytia hemisphaerica)
tttcagctttcaaaggAAGATTATGCAGTAGTGTTAGTTGGTGGTGGAAG
CATTTTAATTGATGTCAACAAAACTTTCGCTGGAGCTTCCAAAATCATCA
AACCGCCCTTCTATCAGGTCGCAAACGCAGTCGGAGCAGCTTTGAGTCAA
GTCAGCGGAACTTTCGACAAATTAATTGAAATGAACGATGATCAAAACAC
ACGGCAGACGATCCTCCAACAAGCAAAAGATTACGCTATAGAGCAGGCTG
TTCAAAATGGCGCCATTCGTAGCACCTGCGCCATCTTGGATATTCAAGAG
ATTAACATGACGTACGTAGCTCTACCTCGTAAACGTCTTACTGTGAAAGC
GGTTGGAGATCTACAAGACGTTTCAACGGAAACAAACGTGGAGAGAACAC
AAAAAGGATCAGGAGACGTTCGTTTTGAAAATAACGATCatgcaaaagaa
aagaaaaaatctaatgagAAGCCAGaaacCGAACTTCAACAAACCACTGA
TGAAAACCAACCTCGCACCAGTCCTCAAACAACAATAATAGAGGATTACA
AACCACACGTCAATGAACAAGGGGAATGGGAACTAAGTTTGTATGATGTT
GAATGTTTGGCGTTAGGAGCGGGCGTTCTTGGGTGTGGAGGTGGTGGTAG
CCCGTACTTGGGAAAAATGGAATTGTTGAGATGTATCGAGGACGGTTTTA
CACCAAGGATTATTCACCCTGAAtttcagctttcaaaggAAGATTATGCA
GTAGTGTTAGTTGGTGGTGGAAGCATTTTAATTGATGTCAACAAAACTTT
CGCTGGAGCTTCCAAAATCATCAAACCGCCCTTCTATCAGGTCGCAAACG
CAGTCGGAGCAGCTTTGAGTCAAGTCAGCGGAACTTTCGACAAATTAATT
GAAATGAACGATGATCAAAACACACGGCAGACGATCCTCCAACAAGCAAA
AGATTACGCTATAGAGCAGGCTGTTCAAAATGGCGCCATTCGTAGCACCT
GCGCCATCTTGGATATTCAAGAGATTAACATGACGTACGTAGCTCTACCT
CGTAAACGTCTTACTGTGAAAGCGGTTGGAGATCTACAAGACGTTTCAAC
GGAAACAAACGTGGAGAGAACACAAAAAGGATCAGGAGACGTTCGTTTTG
AAAATAACGATCatgcaaaagaaaagaaaaaatctaatgagAAGCCAGaa
acCGAACTTCAACAAACCACTGATGAAAACCAACCTCGCACCAGTCCTCA
AACAACAATAATAGAGGATTACAAACCACACGTCAATGAACAAGGGGAAT
GGGAACTAAGTTTGTATGATGTTGAATGTTTGGCGTTAGGAGCGGGCGTT
CTTGGGTGTGGAGGTGGTGGTAGCCCGTACTTGGGAAAAATGGAATTGTT
GAGATGTATCGAGGACGGTTTTACACCAAGGATTATTCACCCTGAAtttc
agctttcaaaggAAGATTATGCAGTAGTGTTAGTTGGTGGTGGAAGCATT
TTAATTGATGTCAACAAAACTTTCGCTGGAGCTTCCAAAATCATCAAACC
GCCCTTCTATCAGGTCGCAAACGCAGTCGGAGCAGCTTTGAGTCAAGTCA
GCGGAACTTTCGACAAATTAATTGAAATGAACGATGATCAAAACACACGG
CAGACGATCCTCCAACAAGCAAAAGATTACGCTATAGAGCAGGCTGTTCA
AAATGGCGCCATTCGTAGCACCTGCGCCATCTTGGATATTCAAGAGATTA
ACATGACGTACGTAGCTCTACCTCGTAAACGTCTTACTGTGAAAGCGGTT
GGAGATCTACAAGACGTTTCAACGGAAACAAACGTGGAGAGAACACAAAA
AGGATCAGGAGACGTTCGTTTTGAAAATAACGATCatgcaaaagaaaaga
aaaaatctaatgagAAGCCAGaaacCGAACTTCAACAAACCACTGATGAA
AACCAACCTCGCACCAGTCCTCAAACAACAATAATAGAGGATTACAAACC
ACACGTCAATGAACAAGGGGAATGGGAACTAAGTTTGTATGATGTTGAAT
GTTTGGCGTTAGGAGCGGGCGTTCTTGGGTGTGGAGGTGGTGGTAGCCCG
TACTTGGGAAAAATGGAATTGTTGAGATGTATCGAGGACGGTTTTACACC
AAGGATTATTCACCCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044041-exon-sc0004874-1491911889:3121..3239 | TCONS_00044041-exon-sc0004874-1491911889:3121..3239 | Clytia hemisphaerica | exon |
| TCONS_00044041-exon-sc0004874-1510915933:3121..3239 | TCONS_00044041-exon-sc0004874-1510915933:3121..3239 | Clytia hemisphaerica | exon |
| TCONS_00044041-exon-sc0004874-1575043694:3121..3239 | TCONS_00044041-exon-sc0004874-1575043694:3121..3239 | Clytia hemisphaerica | exon |
| TCONS_00044041-exon-sc0004874-1491911889:3720..4077 | TCONS_00044041-exon-sc0004874-1491911889:3720..4077 | Clytia hemisphaerica | exon |
| TCONS_00044041-exon-sc0004874-1510915933:3720..4077 | TCONS_00044041-exon-sc0004874-1510915933:3720..4077 | Clytia hemisphaerica | exon |
| TCONS_00044041-exon-sc0004874-1575043694:3720..4077 | TCONS_00044041-exon-sc0004874-1575043694:3720..4077 | Clytia hemisphaerica | exon |
| TCONS_00044041-exon-sc0004874-1491911889:4782..5031 | TCONS_00044041-exon-sc0004874-1491911889:4782..5031 | Clytia hemisphaerica | exon |
| TCONS_00044041-exon-sc0004874-1510915933:4782..5031 | TCONS_00044041-exon-sc0004874-1510915933:4782..5031 | Clytia hemisphaerica | exon |
| TCONS_00044041-exon-sc0004874-1575043694:4782..5031 | TCONS_00044041-exon-sc0004874-1575043694:4782..5031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004874 | supercontig | sc0004874:3121..5031 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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