TCONS_00044039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044039
Unique NameTCONS_00044039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044039 ID=TCONS_00044039|Name=TCONS_00044039|organism=Clytia hemisphaerica|type=transcript|length=799bp
tggccaatcaggccgaacctgcattgcagggaaaatctccctgcaggcga
gttacctgcgccaaacgttaaaccagcagcaaaaatatcataaactagac
tgtgaaaaaagtttaacgtttGGACTCCCAGGCTACAGCATAACTAACAT
CTTTCGCCTCTTGCTTCTTTTCGATTAAGATGTTCTCGATCTTTGCTTCT
ATCTTTTTCTCGGGTATANCTTCTTTTCGATTAAGAAGTTCTCGATCTTT
GTTTCTATCTTTTTCTCGGGTATGCTCATCTTTGTTTCCaggctttcttt
gatttcttttgtaagaaaGTTCACATCATTTGATATCAGTTgggaaattt
cttcattttgtactttcatgatgttttcacatgctttaatttccttttga
aGTCCTTCGATTTTGGTGTTTGTGCGTGTTTCAACTCGTTCAATCAGCTC
TGGCGAGATCTTAACGCAACTTTGGCATTGAAAACTTCGCGATTTAAACG
TTAAGCAAATCTGTATTTGGTAGATTGGTAGCTCAGAACAATCATAATGA
ACATCTCGGTGGCACTTCCTACAGGTCAGAGTGTCTTTTGGTGTCGTTCC
TTCATTAATAATGCATTTTTCTGGGATGCAAACCTCATTTTTAAGCGGCA
AttcttggtcattttcatcgattttttcctCCATTTTTCTTATTCAAATT
CTTATTACAAACTAAACCTTGAAATCTATTACTATTTTTGTAGGTCCATT
AAACAtacttttatatattttaaatgTGTGGCCAAATTGAAGCTTGAga
Run BLAST on NCBI

protein sequence of TCONS_00044039-protein

>TCONS_00044039-protein ID=TCONS_00044039-protein|Name=TCONS_00044039-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MEEKIDENDQELPLKNEVCIPEKCIINEGTTPKDTLTCRKCHRDVHYDCS
ELPIYQIQICLTFKSRSFQCQSCVKISPELIERVETRTNTKIEGLQKEIK
ACENIMKVQNEEISQLISNDVNFLTKEIKESLETKMSIPEKKIETKIENF
LIEKKXYPRKR
Run BLAST on NCBI

transcript from alignment at sc0004872:4417..5215

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044039 ID=TCONS_00044039|Name=TCONS_00044039|organism=Clytia hemisphaerica|type=transcript|length=799bp|location=Sequence derived from alignment at sc0004872:4417..5215 (Clytia hemisphaerica)
tcTCAAGCTTCAATTTGGCCACAcatttaaaatatataaaagtaTGTTTA
ATGGACCTACAAAAATAGTAATAGATTTCAAGGTTTAGTTTGTAATAAGA
ATTTGAATAAGAAAAATGGaggaaaaaatcgatgaaaatgaccaagaaTT
GCCGCTTAAAAATGAGGTTTGCATCCCAGAAAAATGCATTATTAATGAAG
GAACGACACCAAAAGACACTCTGACCTGTAGGAAGTGCCACCGAGATGTT
CATTATGATTGTTCTGAGCTACCAATCTACCAAATACAGATTTGCTTAAC
GTTTAAATCGCGAAGTTTTCAATGCCAAAGTTGCGTTAAGATCTCGCCAG
AGCTGATTGAACGAGTTGAAACACGCACAAACACCAAAATCGAAGGACtt
caaaaggaaattaaagcatgtgaaaacatcatgaaagtacaaaatgaaga
aatttcccAACTGATATCAAATGATGTGAACtttcttacaaaagaaatca
aagaaagcctGGAAACAAAGATGAGCATACCCGAGAAAAAGATAGAAACA
AAGATCGAGAACTTCTTAATCGAAAAGAAGNTATACCCGAGAAAAAGATA
GAAGCAAAGATCGAGAACATCTTAATCGAAAAGAAGCAAGAGGCGAAAGA
TGTTAGTTATGCTGTAGCCTGGGAGTCCaaacgttaaacttttttcacag
tctagtttatgatatttttgctgctggtttaacgtttggcgcaggtaact
cgcctgcagggagattttccctgcaatgcaggttcggcctgattggcca

Coding sequence (CDS) from alignment at sc0004872:4417..5215

>TCONS_00044039 ID=TCONS_00044039|Name=TCONS_00044039|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0004872:4417..5215 (Clytia hemisphaerica)
ATGGaggaaaaaatcgatgaaaatgaccaagaaTTGCCGCTTAAAAATGA
GGTTTGCATCCCAGAAAAATGCATTATTAATGAAGGAACGACACCAAAAG
ACACTCTGACCTGTAGGAAGTGCCACCGAGATGTTCATTATGATTGTTCT
GAGCTACCAATCTACCAAATACAGATTTGCTTAACGTTTAAATCGCGAAG
TTTTCAATGCCAAAGTTGCGTTAAGATCTCGCCAGAGCTGATTGAACGAG
TTGAAACACGCACAAACACCAAAATCGAAGGACttcaaaaggaaattaaa
gcatgtgaaaacatcatgaaagtacaaaatgaagaaatttcccAACTGAT
ATCAAATGATGTGAACtttcttacaaaagaaatcaaagaaagcctGGAAA
CAAAGATGAGCATACCCGAGAAAAAGATAGAAACAAAGATCGAGAACTTC
TTAATCGAAAAGAAGNTATACCCGAGAAAAAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027694XLOC_027694Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044039-proteinTCONS_00044039-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044039-exon-sc0004872-1491911889:4417..5215TCONS_00044039-exon-sc0004872-1491911889:4417..5215Clytia hemisphaericaexon
TCONS_00044039-exon-sc0004872-1510915933:4417..5215TCONS_00044039-exon-sc0004872-1510915933:4417..5215Clytia hemisphaericaexon
TCONS_00044039-exon-sc0004872-1575043694:4417..5215TCONS_00044039-exon-sc0004872-1575043694:4417..5215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004872supercontigsc0004872:4417..5215 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87961	1.65019	2.31046	2.84639	0.288137	0.333408	0.181094	0.50895	0.267909	0.236278	1.09153	0.44761	0.365988	0.510643	0.233581	0.0910007	0.155655	0.221091	0.283302	0.404612	0.386403	0.270744	0.418264	0.347875	0.467261	0.452702	0.566603	0.17157	0.430454	0.290792
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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