TCONS_00044034 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044034
Unique NameTCONS_00044034
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044034 ID=TCONS_00044034|Name=TCONS_00044034|organism=Clytia hemisphaerica|type=transcript|length=1166bp
aaaacaaacaaaatggctgcaCACTGAAAAAGGTGAGAGTGTTTGATTGA
CCAAAACTGGATTAAAACTAAGGTTTATGCCTTAACACTCCCCCAACAGA
ATGAAaaataagttattttaattaaaCAATAACGCCGTGTTTGTAACACT
GTTCACTACATTACTACACATCAATAAATTAATGCACTGAACAGTGTTAC
AAACACGGCGTTATTGTTTATTCAATCTCATCCTGACGCTACATTCAAAC
AGAACCGTTCAATCAACATCACTGCTGTTTGTGGGCGCGATCAATGAACA
CGAGGAAGAAAGATCGTATTGACTATCGCATCCTTGCATCAACCGGAGAA
AAGGTTATCGCTCATCCGTCGTCCGAAACTTCaactcgtccgtcgtccga
cacttcaattcatccgtcgtccgacacttcaattcgacCGTTGTCCGACA
CCTCAActcatccgtcgtccgacacttcaactcgtccgtcgtccgacact
tcaattcattcgtcgtccgacacttcaattcgtccgtcgtccgacacctc
aattcgtccgtcgtccgacacctcaattcgtccgtcgtccgacacttcaa
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcaattcgtccgtcgtccg
acacttcaattcatccgtcgtccgacacctcaattcgtccgtcgtccgac
acctcaactCGTCCGTCGTCCTACACttcaattcatccgtcgtccgacac
ttcaattcgtccgtcgtccgacacctcaattcgtccgtcgtccgacactt
caattcatccgtcgtccgacacNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtccgacacttcaatt
cgctCAATGGCAGAGacagaaatcaaaatcattttgttCTCAGCCTCAGG
TCTTGAGGATCAGATACTTGACATCATCCAAGACTATGCACCAGATGACA
TCAAAGAGTCGCCAGAACTCATCAAATCGCGTGCTACCAAAATTGAGACA
CTTCGTAACCAGTTCAGAGAGAAATATAGAGAACTTCGTTTTCATCTTCA
AGATCAAGATGGTGTTTATGAGCAAAGTTATAGTAAACAATTGACATTAA
TTACATCAAAAGTCAG
Run BLAST on NCBI

transcript from alignment at sc0004867:1..1286-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044034 ID=TCONS_00044034|Name=TCONS_00044034|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at sc0004867:1..1286- (Clytia hemisphaerica)
AAAACAAACAAAATGGCTGCACACTGAAAAAGGTGAGAGTGTTTGATTGA
CCAAAACTGGATTAAAACTAAGGTTTATGCCTTAACACTCCCCCAACAGA
ATGAAAAATAAGTTATTTTAATTAAACAATAACGCCGTGTTTGTAACACT
GTTCACTACATTACTACACATCAATAAATTAATGCACTGAACAGTGTTAC
AAACACGGCGTTATTGTTTATTCAATCTCATCCTGACGCTACATTCAAAC
AGAACCGTTCAATCAACATCACTNACTACATTACTACACATCAATAAATT
AATGCACTGAACAGTGTTACAAACACGGCGTTATTGTTTATTCAATCTCA
TCCTGACGCTACATTCAAACAGGACCGTTCAATCAACATCACTGCTGTTT
GTGGGCGCGATCAATGAACACGAGGAAGAAAGATCGTATTGACTATCGCA
TCCTTGCATCAACCGGAGAAAAGGTTATCGCTCATCCGTCGTCCGAAACT
TCAACTCGTCCGTCGTCCGACACTTCAATTCATCCGTCGTCCGACACTTC
AATTCGACCGTTGTCCGACACCTCAACTCATCCGTCGTCCGACACTTCAA
CTCGTCCGTCGTCCGACACTTCAATTCATTCGTCGTCCGACACTTCAATT
CGTCCGTCGTCCGACACCTCAATTCGTCCGTCGTCCGACACCTCAATTCG
TCCGTCGTCCGACACTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTCAATTCGTCCGTCGTCCGACACTTCAATTCATCCGTCGTCCGACACCT
CAATTCGTCCGTCGTCCGACACCTCAACTCGTCCGTCGTCCTACACTTCA
ATTCATCCGTCGTCCGACACTTCAATTCGTCCGTCGTCCGACACCTCAAT
TCGTCCGTCGTCCGACACTTCAATTCATCCGTCGTCCGACACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTCCGACACTTCAATTCGCTCAATGGCAGAGACAGAAATCAAAATC
ATTTTGTTCTCAGCCTCAGGTCTTGAGGATCAGATACTTGACATCATCCA
AGACTATGCACCAGATGACATCAAAGAGTCGCCAGAACTCATCAAATCGC
GTGCTACCAAAATTGAGACACTTCGTAACCAGTTCAGAGAGAAATATAGA
GAACTTCGTTTTCATCTTCAAGATCAAGATGGTGTTTATGAGCAAAGTTA
TAGTAAACAATTGACATTAATTACATCAAAAGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027690XLOC_027690Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044034-exon-sc0004867-1575043694:1020..1286TCONS_00044034-exon-sc0004867-1575043694:1020..1286Clytia hemisphaericaexon
TCONS_00044034-exon-sc0004867-1575043694:1..899TCONS_00044034-exon-sc0004867-1575043694:1..899Clytia hemisphaericaexon
TCONS_00044034-exon-sc0004867-1510915933:1020..1286TCONS_00044034-exon-sc0004867-1510915933:1020..1286Clytia hemisphaericaexon
TCONS_00044034-exon-sc0004867-1510915933:1..899TCONS_00044034-exon-sc0004867-1510915933:1..899Clytia hemisphaericaexon
TCONS_00044034-exon-sc0004867-1491911889:1020..1286TCONS_00044034-exon-sc0004867-1491911889:1020..1286Clytia hemisphaericaexon
TCONS_00044034-exon-sc0004867-1491911889:1..899TCONS_00044034-exon-sc0004867-1491911889:1..899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004867supercontigsc0004867:1..1286 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.99681	4.98879	4.76631	3.04626	2.22217	1.71162	0.712102	1.91465	1.17138	2.61688	0.802712	2.34212	1.20815	1.36286	0.970854	1.11282	1.19347	0.921873	0.745966	1.99934	0.87087	1.00591	0.604856	1.83779	5.55531	4.18442	0.559161	1.07952	1.41285	1.33588
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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