TCONS_00044010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044010
Unique NameTCONS_00044010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044010 ID=TCONS_00044010|Name=TCONS_00044010|organism=Clytia hemisphaerica|type=transcript|length=560bp
catattgatccgtcatcgagccgttccgatgaACGATCCtatcgagcgcg
gacgtctggccTTACTTGCTTCTAAAATTAACCCCCCCAATTAACACTAT
ATACTACCATGAAGTCGgctaacttgcatcagtggaggcaaacatgcata
gccatcaaatgactgaccaatcagcAAAGCagcacaaaatttcaaaacaa
atcaactaAGCACAGCTCCGTTTGTCTCCTTTCGCAGCtcttactctacc
atttttgtttggattaaagtttatattttaatgaccagccaggtcattca
tttgagggctatgcatgttagcctccactgatgtaagTTACCCAGCTGGG
CTGATTTCACGGTATATACCATCAACCATGGAGAAAACCTGCATATTGCC
ACCTTTTTCAATATATATAACTGAACATATCCACTGAAAAGGATACGAGA
AAAGTTATGCTTTTCTTCAATCGAAATTATCAAAGCTCTGAAAAGATAAC
TGTTGTTGTTTATGGTTCTTATTATGCTAGATTATGTTGTCTGTGCACTT
TCACTTCCAC
Run BLAST on NCBI

transcript from alignment at sc0004843:2577..3136

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044010 ID=TCONS_00044010|Name=TCONS_00044010|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at sc0004843:2577..3136 (Clytia hemisphaerica)
GTGGAAGTGAAAGTGCACAGACAACATAATCTAGCATAATAAGAACCATA
AACAACAACAGTTATCTTTTCAGAGCTTTGATAATTTCGATTGAAGAAAA
GCATAACTTTTCTCGTATCCTTTTCAGTGGATATGTTCAGTTATATATAT
TGAAAAAGGTGGCAATATGCAGGTTTTCTCCATGGTTGATGGTATATACC
GTGAAATCAGCCCAGCTGGGTAActtacatcagtggaggctaacatgcat
agccctcaaatgaatgacctggctggtcattaaaatataaactttaatcc
aaacaaaaatggtagagtaagaGCTGCGAAAGGAGACAAACGGAGCTGTG
CTtagttgatttgttttgaaattttgtgctGCTTTgctgattggtcagtc
atttgatggctatgcatgtttgcctccactgatgcaagttagcCGACTTC
ATGGTAGTATATAGTGTTAATTGGGGGGGTTAATTTTAGAAGCAAGTAAg
gccagacgtccgcgctcgataGGATCGTtcatcggaacggctcgatgacg
gatcaatatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027666XLOC_027666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044010-exon-sc0004843-1491911889:2577..3136TCONS_00044010-exon-sc0004843-1491911889:2577..3136Clytia hemisphaericaexon
TCONS_00044010-exon-sc0004843-1510915933:2577..3136TCONS_00044010-exon-sc0004843-1510915933:2577..3136Clytia hemisphaericaexon
TCONS_00044010-exon-sc0004843-1575043694:2577..3136TCONS_00044010-exon-sc0004843-1575043694:2577..3136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004843supercontigsc0004843:2577..3136 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.624798	0.842682	1.34126	0	0.420797	0.792032	0.40109	0.520842	0.582029	0.263626	0.729595	0.805694	0.918895	1.57221	0.58386	0.670459	0.888192	0.496768	0.418316	0.897	1.24074	0.821253	0.439638	0	0.223841	0.78072	1.0062	0.305274	0.470238	0.282302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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