TCONS_00044006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044006
Unique NameTCONS_00044006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044006 ID=TCONS_00044006|Name=TCONS_00044006|organism=Clytia hemisphaerica|type=transcript|length=385bp
NACTAAATGATGATTTATCCAAAGATTATGACATTCGAACTGGATTGATT
ATTGTAACAGAAAATTCTAAAAGTGACGACGACTCATTCCAACAAGACAC
CCAAGAATCTTCCAACGATACTCAATTCTTTCAAACCACGACCAATATCA
TTCTCATTGCAATCATTTTAGTGATGTTGACTTTTGTATGTTCTCTCTTG
GTTTTTATTGGTTTACGCCACCTTCGAAGTGATTCTAAAAGATATGGTGT
CCCTGGATCTCCTTCGAAGATGGAAATGCATTAAATTGAAATGACAGTAC
TTTACCATGCCGTTCAATATTTATTAAGTTGCTCTTCGCTTTGTATTATG
Ttaggaaaatatataaaaatggattttaaaaattg
Run BLAST on NCBI

transcript from alignment at sc0004840:4504..5334-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044006 ID=TCONS_00044006|Name=TCONS_00044006|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0004840:4504..5334- (Clytia hemisphaerica)
NACTAAATGATGATTTATCCAAAGATTATGACATTCGAACTGGATTGATT
ATTGTAACAGAAAATTCTAAAAGTGAGTTGAAATTTATTATTCTTGACAA
GAAAATACTAAAATACAGTAACTCTATCAAAAATGTAACTCATCGACAGT
TCATCCGAGGAATTCATAGTCCCTCTCTTATGGCACCCCTGTGTCACAGA
CTCGCCAGGACCCCAGCCCCACAGAGAAATTTGGCAGAAATTTCATCCCC
TTTGGAAAAATACCCTTTGATTTCATCCCCACTCGAAATTGAATGTTAAA
AAATTGCACTCCAAAATCATCCATCCCTGCCGGATTTTTTTAACTTTGGA
ACAATTAAATTACTATTCCCATTGGGATTTCAAAAATGAGTTTTATCCCC
ACTTAGGTAAAGTTCCACCGGGACTCTAAATCGAGCAGAGAGAGCCGTGC
GGACGTTTTCCTTTTTGTACTGCACAGGCACAGGGAGCTTATAATCATCC
AATCTTCAATATTCCTAGGTGACGACGACTCATTCCAACAAGACACCCAA
GAATCTTCCAACGATACTCAATTCTTTCAAACCACGACCAATATCATTCT
CATTGCAATCATTTTAGTGATGTTGACTTTTGTATGTTCTCTCTTGGTTT
TTATTGGTTTACGCCACCTTCGAAGTGATTCTAAAAGATATGGTGTCCCT
GGATCTCCTTCGAAGATGGAAATGCATTAAATTGAAATGACAGTACTTTA
CCATGCCGTTCAATATTTATTAAGTTGCTCTTCGCTTTGTATTATGTTAG
GAAAATATATAAAAATGGATTTTAAAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027663XLOC_027663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044006-exon-sc0004840-1575043694:5263..5334TCONS_00044006-exon-sc0004840-1575043694:5263..5334Clytia hemisphaericaexon
TCONS_00044006-exon-sc0004840-1575043694:4504..4816TCONS_00044006-exon-sc0004840-1575043694:4504..4816Clytia hemisphaericaexon
TCONS_00044006-exon-sc0004840-1510915933:5263..5334TCONS_00044006-exon-sc0004840-1510915933:5263..5334Clytia hemisphaericaexon
TCONS_00044006-exon-sc0004840-1510915933:4504..4816TCONS_00044006-exon-sc0004840-1510915933:4504..4816Clytia hemisphaericaexon
TCONS_00044006-exon-sc0004840-1491911889:5263..5334TCONS_00044006-exon-sc0004840-1491911889:5263..5334Clytia hemisphaericaexon
TCONS_00044006-exon-sc0004840-1491911889:4504..4816TCONS_00044006-exon-sc0004840-1491911889:4504..4816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004840supercontigsc0004840:4504..5334 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1346.78	1300.43	1086.06	1075.45	1.48604	0.819734	0	2.25817	0	2.20785	0	0.852284	0	0	0	0	0	0	0	0	0.845069	0	411.705	344.612	0	0	20.9631	21.9606	195.803	213.177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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