TCONS_00044002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044002
Unique NameTCONS_00044002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length897

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044002 ID=TCONS_00044002|Name=TCONS_00044002|organism=Clytia hemisphaerica|type=transcript|length=897bp
AAAGACACTGCAAAATTGTTTCTGCAGGATGTTGGCCTTTTCTTGGTCCT
CGTGCTTTAGGGATGTCTTGTCATCGGGCGTTTCAAGAAGATGGGAAAct
ccactttttgatttaagTTTGCCTCTGACATGTGACCAGAACGCTTTTGG
GTTTCTCTTTGAGTTTTCACCGACGGCTAGATCGTATTCTCTTTTTGCAA
GTGCCATCTTTCGATTGACACGGTTCCTCGCGATTACATATCGGATTCTT
GCTTGACATCTCTTTGTGggtgatgattttgattttagNTCTCTTTTTGC
AAGTGCCATCTTTCGATTGACACGGTTCCTCGCGATTACATATCGGATTC
TTGCTTGACGTCTCTTTGTGggtgatgattttgattttaaccaCATCCTG
TGAAGTCGCCTCTTTTCTTTGATGTCATTACGTAGTTCAGCATTAATTGG
AATTCTTTTTCCAGTGAGGCGCTCCTAACTCTTTTCTCGGGACAAATTGA
TCTCTGAGTtgaagaagttttgttttgaattttgaccagAGCTCCTCGAT
CGACCCATGTGAGGTATCTATGAATTTTCTCGTCCAGTTGATTCTTTGCA
GATGACTTTTCATCGACTTAAAGTCTGCCAAGTGGTAGGTGTATCTTTTG
GTCGGTGCTTTAAGTTCCATATAACATTTAAAGCTAAAAGAGAGAACGCT
ATGATCACTTTTTCCTAAAGGGCTTAGGAACTTTGGATCTTGAACCTGAT
CTCTTTCATCTGTCAAGATGAGGTCAATCAGTGAAGGCTCGTCAGTATCT
CGACATCTGGTAGGTTCATTCGTATGTTGGAAAAGGAATGAATCACGTAA
TGCTTCCAGGAATTGCTCTTCTTTACTTTCCTCTACATGTGGGCTTG
Run BLAST on NCBI

protein sequence of TCONS_00044002-protein

>TCONS_00044002-protein ID=TCONS_00044002-protein|Name=TCONS_00044002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
SPHVEESKEEQFLEALRDSFLFQHTNEPTRCRDTDEPSLIDLILTDERDQ
VQDPKFLSPLGKSDHSVLSFSFKCYMELKAPTKRYTYHLADFKSMKSHLQ
RINWTRKFIDTSHGSIEELWSKFKTKLLQLRDQFVPRKELGAPHWKKNSN
Run BLAST on NCBI

transcript from alignment at sc0004833:5043..5939

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044002 ID=TCONS_00044002|Name=TCONS_00044002|organism=Clytia hemisphaerica|type=transcript|length=897bp|location=Sequence derived from alignment at sc0004833:5043..5939 (Clytia hemisphaerica)
CAAGCCCACATGTAGAGGAAAGTAAAGAAGAGCAATTCCTGGAAGCATTA
CGTGATTCATTCCTTTTCCAACATACGAATGAACCTACCAGATGTCGAGA
TACTGACGAGCCTTCACTGATTGACCTCATCTTGACAGATGAAAGAGATC
AGGTTCAAGATCCAAAGTTCCTAAGCCCTTTAGGAAAAAGTGATCATAGC
GTTCTCTCTTTTAGCTTTAAATGTTATATGGAACTTAAAGCACCGACCAA
AAGATACACCTACCACTTGGCAGACTTTAAGTCGATGAAAAGTCATCTGC
AAAGAATCAACTGGACGAGAAAATTCATAGATACCTCACATGGGTCGATC
GAGGAGCTctggtcaaaattcaaaacaaaacttcttcaACTCAGAGATCA
ATTTGTCCCGAGAAAAGAGTTAGGAGCGCCTCACTGGAAAAAGAATTCCA
ATTAATGCTGAACTACGTAATGACATCAAAGAAAAGAGGCGACTTCACAG
GATGtggttaaaatcaaaatcatcaccCACAAAGAGACGTCAAGCAAGAA
TCCGATATGTAATCGCGAGGAACCGTGTCAATCGAAAGATGGCACTTGCA
AAAAGAGANctaaaatcaaaatcatcaccCACAAAGAGATGTCAAGCAAG
AATCCGATATGTAATCGCGAGGAACCGTGTCAATCGAAAGATGGCACTTG
CAAAAAGAGAATACGATCTAGCCGTCGGTGAAAACTCAAAGAGAAACCCA
AAAGCGTTCTGGTCACATGTCAGAGGCAAActtaaatcaaaaagtggagT
TTCCCATCTTCTTGAAACGCCCGATGACAAGACATCCCTAAAGCACGAGG
ACCAAGAAAAGGCCAACATCCTGCAGAAACAATTTTGCAGTGTCTTT

Coding sequence (CDS) from alignment at sc0004833:5043..5939

>TCONS_00044002 ID=TCONS_00044002|Name=TCONS_00044002|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0004833:5043..5939 (Clytia hemisphaerica)
AGCCCACATGTAGAGGAAAGTAAAGAAGAGCAATTCCTGGAAGCATTACG
TGATTCATTCCTTTTCCAACATACGAATGAACCTACCAGATGTCGAGATA
CTGACGAGCCTTCACTGATTGACCTCATCTTGACAGATGAAAGAGATCAG
GTTCAAGATCCAAAGTTCCTAAGCCCTTTAGGAAAAAGTGATCATAGCGT
TCTCTCTTTTAGCTTTAAATGTTATATGGAACTTAAAGCACCGACCAAAA
GATACACCTACCACTTGGCAGACTTTAAGTCGATGAAAAGTCATCTGCAA
AGAATCAACTGGACGAGAAAATTCATAGATACCTCACATGGGTCGATCGA
GGAGCTctggtcaaaattcaaaacaaaacttcttcaACTCAGAGATCAAT
TTGTCCCGAGAAAAGAGTTAGGAGCGCCTCACTGGAAAAAGAATTCCAAT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027659XLOC_027659Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044002-proteinTCONS_00044002-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044002-exon-sc0004833-1491911889:5043..5939TCONS_00044002-exon-sc0004833-1491911889:5043..5939Clytia hemisphaericaexon
TCONS_00044002-exon-sc0004833-1510915933:5043..5939TCONS_00044002-exon-sc0004833-1510915933:5043..5939Clytia hemisphaericaexon
TCONS_00044002-exon-sc0004833-1575043694:5043..5939TCONS_00044002-exon-sc0004833-1575043694:5043..5939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004833supercontigsc0004833:5043..5939 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31863	0.443987	0.983892	1.53209	2.47678	1.84784	1.91256	2.44997	1.30437	1.76921	0.520461	1.80887	2.41542	2.69583	0.39858	0.449739	0.774308	0.371028	1.04836	1.60434	1.16031	1.93595	0.176732	1.08865	1.47828	1.92949	1.19441	0.812324	0.208957	0.460531
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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