TCONS_00043996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043996
Unique NameTCONS_00043996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043996 ID=TCONS_00043996|Name=TCONS_00043996|organism=Clytia hemisphaerica|type=transcript|length=790bp
atttaatgcattttcgctaagcgctatattttcttaatgattgtttttct
ccttattgctatttaagtttcatcatcaggtaggtccattcagcatgttg
cttgtttctcTTTCCTCTTTCCTATTCCAACAATACAATGCTTACATAGT
TGACACATAATACACATTGACAGAAGTATTCCCTGCAATGTctgcaataa
aaaaaaaagtggtctcttcttctCAGTGGCTGCTTTCATAactctttaga
gctttagggtTTTGTGTTTGTGTGCCGGATAAAGGAAGAAAGAAAGCCAG
TTGCAAAATATTATAAACATTATTGACATTAACAGTAAAAGATGGCAGAT
GATGGGTCAAAAATCTTAAGATTCACGTCTGATACTGCCAGTCCCAAGCA
TCAAGAACCCTCTGGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTA
AAGCATTGAAGAAAAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTA
CGAAGATTGTATCAGTGCAAGGAGGGAGAAGAGTATGGTGTGGAGATTGA
TCTAGATATTTTACTCCAAGAAAAAGATGGTGAAAAGCAACAGGAAATGT
TACAGaatttacttTCAGGATCAAAAGAGCCTGTAGAAGAATTTATTCAA
AATCTTTTGGAGAAGATAAAAAGCATATTCTAcatattaaaatgaaaaaa
taagattGTCAGATGGTGAAATGATGCGTAATAATGGATCCTTTTCTAGC
AAGAGCAAAATATAAGTATGATGGTGAACAGGCAGATTAC
Run BLAST on NCBI

protein sequence of TCONS_00043996-protein

>TCONS_00043996-protein ID=TCONS_00043996-protein|Name=TCONS_00043996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MADDGSKILRFTSDTASPKHQEPSGKKYQATAKYDRKALKKRLVVEEWLH
YELRRLYQCKEGEEYGVEIDLDILLQEKDGEKQQEMLQNLLSGSKEPVEE
FIQNLLEKIKSIFYILK
Run BLAST on NCBI

transcript from alignment at sc0004821:11..4614-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043996 ID=TCONS_00043996|Name=TCONS_00043996|organism=Clytia hemisphaerica|type=transcript|length=4604bp|location=Sequence derived from alignment at sc0004821:11..4614- (Clytia hemisphaerica)
ATTTAATGCATTTTCGCTAAGCGCTATATTTTCTTAATGATTGTTTTTCT
CCTTATTGCTATTTAAGTTTCATCATCAGGTAGGTCCATTCAGCATGTTG
CTTGTTTCTCTTTCCTCTTTCCTATTCCAACAATACAATGCTTACATAGT
TGACACATAATACACATTGACAGAAGTATTCCCTGCAATGTCTGCAATAA
AAAAAAAAGTGGTCTCTTCTTCTCAGTGGCTGCTTTCATAACTCTTTAGA
GCTTTAGGGTTTTGTGTTTGTGTGCCGGATAAAGGAAGAAAGAAAGCCAG
TTGCAAAATATTATAAACATTATTGACATTAACAGTAAAAGATGGCAGAT
GATGGGTCAAAAATCTTAAGATTCACGTCTGATACTGCCAGTCCCAAGCA
TCAAGAACCCTCTGGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTA
AAGCATTGAAGAAAAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTA
CGAAGATTGTATCAGTGCAAGGTATTACTTTCTCATTTATTATTCTCTTA
GGAGAGCCAAACCATAATACAAAAAATTGGTGTGACAGTTGAAGTTTAAA
CCACATTAGGTGTACGAAAAGATTTGTTGTTACTTGAATAAGACTACTGC
AAGAATGACTTTTCTATATATACAATTGGGTTTATACACACTTCAAGATT
TTCCCTACCTCAAGAATCTTCAGATATTTTTGGTAGATAAATTCAAAGGA
AAACTTTGGTCAAAGAGAGATTGATCTTAGATATTTTACTCCAAGAAAAA
GATAGCAAAAAACAACAAGAAATGTTACAGGTCCAGATGTATTTTTGTTT
AATCATCTCCTTTAATTCACTTTTTTATAGGAGGGAGAAGAGTATGGTGT
GGAGATTGATCTAGATATTTTACTCCAAGAAAAAGATGGTGAAAAGCAAC
AGGAAATGTTACAGGTGCAAATGTATTCTCGTTTAATCATTATAAATACC
ATAATTGTATGTTTTTAGCATCAAAAACCTTGAAAATGTTTGATATCTTC
ACAAAAAACTATGAACACAACAATTTTGGTTAAGAAAATCTTAATTAAAT
AAAACCTTAAACATCAATAAAATTCCACCATATCCAAGGAAAAACTATTT
TAAAGAAAAAGAAATCAAATTTACTGTTTCCACTATAATCTGATTTTTTT
ATCATGCTCACTTGGTTATATATATATTTTTTTTTTAGAATTTACTTTCA
GGATCAAAAGAGCCTGTAGAAGTAAGTGTTTTGCAAAGTTTTTGTTTTTT
ATTTTGTTTGATTGCTCCCATCCAATTACTTCCATTACTTGCTTCACCCA
CCATTTTGTGGGAAATAAAATGAAATGAATCTAACCTTATATTGAATCAA
ACATAAAAAGCCAAGATTGTGTGGATCAAAAAAGGAAAACATAAAAACAC
TTTTCTTTAAACAATATTTCAATCTTTACAGATCTTTATTACAGTATATG
TCCTTATATTGAAATATCCATGTTTTTCTGTTTAGGAATTTATTCAAAAT
CTTTTGGAGAAGATAAAAAGCATGTAAGATGTTTTGATTTTTATCTTCGT
TACTTATTAGTGCAACTAATAAATTTGTGGTCCTGAAAGGACCAATTTAC
ATTACCAATTTTGATTTGGGGACCTGTGATAAGATAAAAAAGTTATTGAG
TCTGATTGGTAAGATGCTTAGTGTATAAAGGTGTATATAAATGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAAGACCTCATTAAATTCTATAAATTCTAACGTTTTAGTAATATT
TTAGAAAGTGTAATTTTTCAAATATTTACTAGTTTTTGAAAAATATATTC
TGTAATGAGTTTACAGTTGTCGTTCATCAGCGTTCATATTTTTTCTGTTC
AATTTGAATTAACATGTCTAAATGAAATGAGCTTCTAGAATGGTATCTAA
TCCAAATAGACCATTTTCCTGTAAATTTGCAAGATTTGTTGAGATTTTTT
GAAAAATCATTTTTTTGTTCTTTTGTATTTTATGTTTTACAGATTCTACA
TATTAAAATGAAAAAATAAGATTGTCAGATGGTGAAATGATGCGTAATAA
TGGATCCTTGTAAGTTTTTTAAGAAACCTTGTTATATAAATGGGCCAAAG
CTTAAATATCCATACCCAAAAACAAAGGCTTCATAATAGTTGGTTTAGCG
TTGGAAAGAAAATGCAGCTATAGTTGAGAGGCTTATTTAGTGCGAACCTA
CTAAGGCAATCATTCCACATATGCCATGACAAGGTGATTTTTACCGAGAA
TGGCAATTCAGCTTCCAAAAGAACAATTTTTATCTTTTTTTTGAATTATT
ATTTCAGTTCTAGCAAGAGCAAAATATAAGTATGATGGTGAACAGGCAGA
TTAC

Coding sequence (CDS) from alignment at sc0004821:11..4614-

>TCONS_00043996 ID=TCONS_00043996|Name=TCONS_00043996|organism=Clytia hemisphaerica|type=CDS|length=1770bp|location=Sequence derived from alignment at sc0004821:11..4614- (Clytia hemisphaerica)
ATTCTACATATTAAAATGAGAATTTATTCAAAATCTTTTGGAGAAGATAA
AAAGCATAATTTACTTTCAGGATCAAAAGAGCCTGTAGAAGAGGGAGAAG
AGTATGGTGTGGAGATTGATCTAGATATTTTACTCCAAGAAAAAGATGGT
GAAAAGCAACAGGAAATGTTACAGATGGCAGATGATGGGTCAAAAATCTT
AAGATTCACGTCTGATACTGCCAGTCCCAAGCATCAAGAACCCTCTGGTA
AGAAGTACCAAGCTACCGCAAAATATGACCGTAAAGCATTGAAGAAAAGA
CTGGTAGTTGAAGAGTGGCTTCATTATGAATTACGAAGATTGTATCAGTG
CAAGATTCTACATATTAAAATGAGAATTTATTCAAAATCTTTTGGAGAAG
ATAAAAAGCATAATTTACTTTCAGGATCAAAAGAGCCTGTAGAAGAGGGA
GAAGAGTATGGTGTGGAGATTGATCTAGATATTTTACTCCAAGAAAAAGA
TGGTGAAAAGCAACAGGAAATGTTACAGATGGCAGATGATGGGTCAAAAA
TCTTAAGATTCACGTCTGATACTGCCAGTCCCAAGCATCAAGAACCCTCT
GGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTAAAGCATTGAAGAA
AAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTACGAAGATTGTATC
AGTGCAAGATTCTACATATTAAAATGAGAATTTATTCAAAATCTTTTGGA
GAAGATAAAAAGCATAATTTACTTTCAGGATCAAAAGAGCCTGTAGAAGA
GGGAGAAGAGTATGGTGTGGAGATTGATCTAGATATTTTACTCCAAGAAA
AAGATGGTGAAAAGCAACAGGAAATGTTACAGATGGCAGATGATGGGTCA
AAAATCTTAAGATTCACGTCTGATACTGCCAGTCCCAAGCATCAAGAACC
CTCTGGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTAAAGCATTGA
AGAAAAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTACGAAGATTG
TATCAGTGCAAGATTCTACATATTAAAATGAGAATTTATTCAAAATCTTT
TGGAGAAGATAAAAAGCATAATTTACTTTCAGGATCAAAAGAGCCTGTAG
AAGAGGGAGAAGAGTATGGTGTGGAGATTGATCTAGATATTTTACTCCAA
GAAAAAGATGGTGAAAAGCAACAGGAAATGTTACAGATGGCAGATGATGG
GTCAAAAATCTTAAGATTCACGTCTGATACTGCCAGTCCCAAGCATCAAG
AACCCTCTGGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTAAAGCA
TTGAAGAAAAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTACGAAG
ATTGTATCAGTGCAAGATTCTACATATTAAAATGAGAATTTATTCAAAAT
CTTTTGGAGAAGATAAAAAGCATAATTTACTTTCAGGATCAAAAGAGCCT
GTAGAAGAGGGAGAAGAGTATGGTGTGGAGATTGATCTAGATATTTTACT
CCAAGAAAAAGATGGTGAAAAGCAACAGGAAATGTTACAGATGGCAGATG
ATGGGTCAAAAATCTTAAGATTCACGTCTGATACTGCCAGTCCCAAGCAT
CAAGAACCCTCTGGTAAGAAGTACCAAGCTACCGCAAAATATGACCGTAA
AGCATTGAAGAAAAGACTGGTAGTTGAAGAGTGGCTTCATTATGAATTAC
GAAGATTGTATCAGTGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027653XLOC_027653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043996-exon-sc0004821-1575043694:4094..4614TCONS_00043996-exon-sc0004821-1575043694:4094..4614Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1575043694:3651..3734TCONS_00043996-exon-sc0004821-1575043694:3651..3734Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1575043694:3344..3376TCONS_00043996-exon-sc0004821-1575043694:3344..3376Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1575043694:3042..3079TCONS_00043996-exon-sc0004821-1575043694:3042..3079Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1575043694:306..372TCONS_00043996-exon-sc0004821-1575043694:306..372Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1575043694:11..57TCONS_00043996-exon-sc0004821-1575043694:11..57Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1510915933:4094..4614TCONS_00043996-exon-sc0004821-1510915933:4094..4614Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1510915933:3651..3734TCONS_00043996-exon-sc0004821-1510915933:3651..3734Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1510915933:3344..3376TCONS_00043996-exon-sc0004821-1510915933:3344..3376Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1510915933:3042..3079TCONS_00043996-exon-sc0004821-1510915933:3042..3079Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1510915933:306..372TCONS_00043996-exon-sc0004821-1510915933:306..372Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1510915933:11..57TCONS_00043996-exon-sc0004821-1510915933:11..57Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1491911889:4094..4614TCONS_00043996-exon-sc0004821-1491911889:4094..4614Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1491911889:3651..3734TCONS_00043996-exon-sc0004821-1491911889:3651..3734Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1491911889:3344..3376TCONS_00043996-exon-sc0004821-1491911889:3344..3376Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1491911889:3042..3079TCONS_00043996-exon-sc0004821-1491911889:3042..3079Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1491911889:306..372TCONS_00043996-exon-sc0004821-1491911889:306..372Clytia hemisphaericaexon
TCONS_00043996-exon-sc0004821-1491911889:11..57TCONS_00043996-exon-sc0004821-1491911889:11..57Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043996-proteinTCONS_00043996-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004821supercontigsc0004821:11..4614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.61017	1.52209	1.10646	0.59566	19.2211	12.4193	8.16113	20.1615	20.5192	17.4188	17.6772	18.5442	15.6887	14.282	10.4881	21.4018	6.12103	6.54072	3.64894	6.11487	4.96138	10.5776	20.1544	9.46021	8.51642	9.9526	7.14164	5.86959	15.0022	18.5028
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008025PP1_inhibitor
Vocabulary: Biological Process
TermDefinition
GO:0042325regulation of phosphorylation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042325 regulation of phosphorylation
cellular_component GO:0005737 cytoplasm
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top