TCONS_00043992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043992
Unique NameTCONS_00043992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043992 ID=TCONS_00043992|Name=TCONS_00043992|organism=Clytia hemisphaerica|type=transcript|length=854bp
ACattgttttaattgattttcagTTCATTTATTCCCAAGATAATTACTTC
GCACTTTTAACGACTTTAAAATCAACAATCATCGTTTGTTACAATTCATT
GCACATCGTGTTTTAGACGATTCCAATTTAAGATAACTTGAGCTCCACCG
CAGATGATTGAAAAAGTCAATTCTTCGTGTGCTTCAACTTCACAAACTTC
GCCAATCCTGGTGGTGATAAGATTTATATGAGAGTAATCGTCACGAAAAG
CGCtaataaaatatcgaaaaatggAGATTCCCAAGATTGGCGAAGGTAAa
tctctttgatctttcttttttttcttttgttaattgctTACGTCATTGAT
GACTTGCGAGATATTTCTCATGATGAAAACACACGGGTTTTACCAAGCTG
TCAAATGGGGCGCCGTTTTTACAACGAGCACCTTGTTGTAAAACTTTCAA
AGCGGTATGGCCAATGACCACAGATACGTATATTTCGCATCGTACCttta
gagcaaagcgtgtcgaTAGCGAAATTCACATCTGGAGCAGGTAATTTCTT
GCTTGGAAGTGCTTGAAGCACGAgatttagcccttcgggctttacagaaa
tctgtgggtccgctcctttagagctttacctatcaggggggagggggtcg
gGCTCAAAATCGGTGAAACGATAAGGCATCCAGGATGACCGTCCGGCCGT
CACACGAACCATTCGGCCGTTTAACCGAAACGAGCAGCCGGCCGTCAAAC
CGAGCATCAGGCCGCCGTACCGAGCATCCGGCCGTCGAACTGAACCTCCG
GCCATCGAACCAAGCACCTGGCCGCCGGAGCGTGCGACCGCTAGCCcgcg
gggt
Run BLAST on NCBI

transcript from alignment at sc0004814:4684..5537

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043992 ID=TCONS_00043992|Name=TCONS_00043992|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0004814:4684..5537 (Clytia hemisphaerica)
accccgcgGGCTAGCGGTCGCACGCTCCGGCGGCCAGGTGCTTGGTTCGA
TGGCCGGAGGTTCAGTTCGACGGCCGGATGCTCGGTACGGCGGCCTGATG
CTCGGTTTGACGGCCGGCTGCTCGTTTCGGTTAAACGGCCGAATGGTTCG
TGTGACGGCCGGACGGTCATCCTGGATGCCTTATCGTTTCACCGATTTTG
AGCccgaccccctcccccctgataggtaaagctctaaaggagcggaccca
cagatttctgtaaagcccgaagggctaaatcTCGTGCTTCAAGCACTTCC
AAGCAAGAAATTACCTGCTCCAGATGTGAATTTCGCTAtcgacacgcttt
gctctaaaGGTACGATGCGAAATATACGTATCTGTGGTCATTGGCCATAC
CGCTTTGAAAGTTTTACAACAAGGTGCTCGTTGTAAAAACGGCGCCCCAT
TTGACAGCTTGGTAAAACCCGTGTGTTTTCATCATGAGAAATATCTCGCA
AGTCATCAATGACGTAagcaattaacaaaagaaaaaaaagaaagatcaaa
gagatTTACCTTCGCCAATCTTGGGAATCTccatttttcgatattttatt
aGCGCTTTTCGTGACGATTACTCTCATATAAATCTTATCACCACCAGGAT
TGGCGAAGTTTGTGAAGTTGAAGCACACGAAGAATTGACTTTTTCAATCA
TCTGCGGTGGAGCTCAAGTTATCTTAAATTGGAATCGTCTAAAACACGAT
GTGCAATGAATTGTAACAAACGATGATTGTTGATTTTAAAGTCGTTAAAA
GTGCGAAGTAATTATCTTGGGAATAAATGAActgaaaatcaattaaaaca
atGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027650XLOC_027650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043992-exon-sc0004814-1491911889:4684..5537TCONS_00043992-exon-sc0004814-1491911889:4684..5537Clytia hemisphaericaexon
TCONS_00043992-exon-sc0004814-1510915933:4684..5537TCONS_00043992-exon-sc0004814-1510915933:4684..5537Clytia hemisphaericaexon
TCONS_00043992-exon-sc0004814-1575043694:4684..5537TCONS_00043992-exon-sc0004814-1575043694:4684..5537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004814supercontigsc0004814:4684..5537 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398986	0.828647	1.20968	1.3599	2.19654	1.73791	2.1303	2.00331	1.15004	0.442398	2.32307	0.926782	1.24449	1.18752	0.784779	0.760484	1.08868	0.717788	1.43172	1.31166	1.71405	0.809914	0.761103	0.674235	1.53895	1.79014	6.57717	3.85522	0.765576	0.965147
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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