TCONS_00043987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043987
Unique NameTCONS_00043987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043987 ID=TCONS_00043987|Name=TCONS_00043987|organism=Clytia hemisphaerica|type=transcript|length=314bp
CATAGTTATCACTCTTTGTTAACTTTGTTATTTTGTCGTTGTATTTTGTA
TATAGCTGAAATGAGAAAATATTGTAATATAGTATTAGAAGCAGCATATG
ATTTTAGGATAGTATATAATATCATGTTATAGATTATATATTATGTTATT
ATGTTTTCCCTACCTTGCTGACTCATCTGATAGTGTCTGGATGAATGTAG
CATTTGGAGTCagcaagccccccccccctggtttcTGTTTGCCTTGTTTG
CCAGACTGCACTGTCATGCTCTCTGCTCCAGTCCCCTTTTGCTATAAAGC
CTTTGCATGCAGGC
Run BLAST on NCBI

transcript from alignment at sc0004810:4246..4559

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043987 ID=TCONS_00043987|Name=TCONS_00043987|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at sc0004810:4246..4559 (Clytia hemisphaerica)
GCCTGCATGCAAAGGCTTTATAGCAAAAGGGGACTGGAGCAGAGAGCATG
ACAGTGCAGTCTGGCAAACAAGGCAAACAgaaaccagggggggggggctt
gctGACTCCAAATGCTACATTCATCCAGACACTATCAGATGAGTCAGCAA
GGTAGGGAAAACATAATAACATAATATATAATCTATAACATGATATTATA
TACTATCCTAAAATCATATGCTGCTTCTAATACTATATTACAATATTTTC
TCATTTCAGCTATATACAAAATACAACGACAAAATAACAAAGTTAACAAA
GAGTGATAACTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027647XLOC_027647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043987-exon-sc0004810-1491911889:4246..4559TCONS_00043987-exon-sc0004810-1491911889:4246..4559Clytia hemisphaericaexon
TCONS_00043987-exon-sc0004810-1510915933:4246..4559TCONS_00043987-exon-sc0004810-1510915933:4246..4559Clytia hemisphaericaexon
TCONS_00043987-exon-sc0004810-1575043694:4246..4559TCONS_00043987-exon-sc0004810-1575043694:4246..4559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004810supercontigsc0004810:4246..4559 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01338	0.809809	0.995098	0.374185	0	0.359969	0	0	3.01094	2.6628	3.62542	2.15858	1.79725	0.98044	2.31901	2.47011	1.86831	1.64637	2.1545	2.54258	0.360345	0	2.32385	1.16894	0	0.16211	1.06603	0	1.66482	2.75216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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