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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043978 ID=TCONS_00043978|Name=TCONS_00043978|organism=Clytia hemisphaerica|type=transcript|length=2172bp
AATGTCTTGTTATTTTGAGCagccaaaaatgacgtcaaaaattCTATATC
AACAAAATATTGACCTCAAGAAAAGGATCTACTTTAAATGACGAAGGGTG
GCTGACAGAAGTTTTATTTAGGATTTTCCAGTTTGGACTAGTCCGCTCAA
ATACAAAGcAGGAACAAATTACCAAACATTTCAAAGACCAAGGTCAAGTC
TGGATACATATGAACGTCGAAGAGACAGTTAAAGTGGAATAATCGAAATA
GTGAATATTACAAGCGATAAGAACGATATCAAATGCTGTCAAAAGCTGGT
GGCTGAGACTCGAATCCATGCGACAAGTTGCAACGACGGCTTTACGATGA
TAATGCTGAcaatctttaaattttaaatgcttcaaagtttgtaaaaaata
gGATGAAACGATAACGATACATTTACTGCAATTACTTTTAACGCATAAGC
AGAATCAAATGTTGGTGGTTGTGATGAAATGTTTAAAGCCATTCGATTTC
TTTGTCAAGTaagactgaaaatgacaaatgATTAATGATAATTATTCTGA
GCATCATCAAAAATTGGCTGCTTTAGGATGAGCGAGTTTCGCATGACaat
ttgaaaatagaaatatataTCCAGCTGTAACTCTTCGCCATTTCAATAAT
TGTGTTATTAATCTTTGAAATATCAACCAGAATGCATACATGTTTAGATG
AATTAATTAACTAGCAAATGTACTCCCGTGTTTTTCCATATTGTCTATTC
TTAGTTTTGTGacaatctttttgatttttgagtagGTAAATGAATTACAA
ATaagaattcaagaaaataacaaaaaaattaacaaaaatacctaaaaata
aataatttttaattatgaaaaaaaattctaagaaaaacacaagaaaaatg
atttgatataaaaaaggaataaatactacaataaataaaataatacaaCA
AATGCTataggggccgtccatatagtacgtacgcaaagattttccaaaaa
tttgatacccctccccattgtacgcagagaacaatagaaatgatgtcatt
taaacaatagatgtacgctatTGCTAAACCCCCTTCTTCCCCCTTCACTA
CTACGTACGTACTATATCGATGGCCCCATATCCGCAGGTACGTAAGTTTC
CTGACGATAATGAAAACGAAAATGATGAAAGACGTTTCTAAACTCCTTGT
CCTTTCTCTATTGATTTTATTTCTACATGAGACCATCCATAGAAGACTTA
CACACACAATGAGTAACTAACTTTATCCATTGATGTCATTCAACGCAGAT
CTCTCCCGAGTTCATGCAAAAGAATTATGGATGTCTTTTACGAATGGTCC
CAAAAGGTCAAAAAAATTACGTACGTATGGATAGGGGGTGGTGGGACGAC
CTTAATTGCAAATTTCTAAATTGACAAACCTTAATAATCCTTTGTTTATT
ATAAAATTCCACTTTATCCAAAATCCTATccacaaattttcattttttag
acaGACCTGCTAAAGACTTCCAAGTTTAATTAAACTATAAAATGAGACTC
ATATAATCACAAAATTAATAGGAGTGTATCTAATCATTGACTAACTTTTT
GAAAGTCGCCAAAAAGAGAGGACTTTTCTTTCTTCCTGAAATATGGACCT
CTCATAATTAAATCATCGGAGAGTTAAGATCACCCCTTGACCACCCCCAG
ATCAACCCCCTCCCTTGTACCCGCCCTTGACTCTGGCGGGCATGACTCAG
CTAGCAGTCTCTGTTCTAGCAATCTCCGTTCTCGCATTTGGCTGTAAGTG
ATAATTTGATGCCATCATGGTCTGACAAATTGACGCATTTACGTATAACT
TTGATATGATACTGGTTAGACAACTCCTTGTGCGTCCAAACATGATCGAG
CATTTTCCCATCGATGTGTGTTGGAAAGCGCGGAAGCAAATCATAATCTT
GAAGAATTTCGGCCAACAATTGATCATGATCCATTTCGAAGCCGTCCATG
TTGAAGTCTCCTAAAATAATATCAATTGTGTATCTTTCAATAAATTGAGC
AAGACTGTAACAGAACACATCACGTTGAATTCTAGAGCCTTTATAGagaa
ccaaaacacaaaattccttttcagtaaattcagcttttctaaattttaca
agAGAAAAGCATGATGAATGAT Run BLAST on NCBI transcript from alignment at sc0004802:2371..5049- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043978 ID=TCONS_00043978|Name=TCONS_00043978|organism=Clytia hemisphaerica|type=transcript|length=2679bp|location=Sequence derived from alignment at sc0004802:2371..5049- (Clytia hemisphaerica)
AATGTCTTGTTATTTTGAGCAGCCAAAAATGACGTCAAAAATTCTATATC
AACAAAATATTGACCTCAAGAAAAGGATCTACTTTAAATGACGAAGGGTG
GCTGACAGAAGTTTTATTTAGGATTTTCCAGTTTGGACTAGTCCGCTCAA
ATACAAAGGTACTCTATGTTTTTAGCCGCCTTGTGTTTGTATCTCATAAA
GTGATAATAAAGCAATTTTATGATAGTTTTTCATGATTTCTGGTCGAAAA
TATCCTAATTAGAATTCGAATAAGACCAAGAAATCCAAAGTAAAGATTCC
AGCCAAATCAACGTTTTAAATTTTAAGTACATACAGGTAAAAATTATTAT
CTTGAGTTGCCATTTTATGAATATAATAAGAATATATTTCCAAGTATTTG
CAATCCAAACNGATTTTATGAATATAATAAGAATATATTTCCAAGCAGTA
TTTGCAATCCAAATTTTCAATAATTAGTCCATAGAAAATATCTCCTGATT
TACAAATTATATGTTTTGTGTGCAAATTTGGCTTTTTTTCACATCCGGTG
GGTTTCCGGCTTCCAAAAAAATAAAAATCAATTTTAAATGTTTGAGTTTC
ATAAATGTCACATGATCATACCATTCAAAGTTTAAAAAAATAACAAATTA
ATTTTCTTTTTCCAGCAGGAACAAATTACCAAACATTTCAAAGACCAAGG
TCAAGTCTGGATACATATGAACGTCGAAGAGACAGTTAAAGTGGAATAAT
CGAAATAGTGAATATTACAAGCGATAAGAACGATATCAAATGCTGTCAAA
AGCTGGTGGCTGAGACTCGAATCCATGCGACAAGTTGCAACGACGGCTTT
ACGATGATAATGCTGACAATCTTTAAATTTTAAATGCTTCAAAGTTTGTA
AAAAATAGGATGAAACGATAACGATACATTTACTGCAATTACTTTTAACG
CATAAGCAGAATCAAATGTTGGTGGTTGTGATGAAATGTTTAAAGCCATT
CGATTTCTTTGTCAAGTAAGACTGAAAATGACAAATGATTAATGATAATT
ATTCTGAGCATCATCAAAAATTGGCTGCTTTAGGATGAGCGAGTTTCGCA
TGACAATTTGAAAATAGAAATATATATCCAGCTGTAACTCTTCGCCATTT
CAATAATTGTGTTATTAATCTTTGAAATATCAACCAGAATGCATACATGT
TTAGATGAATTAATTAACTAGCAAATGTACTCCCGTGTTTTTCCATATTG
TCTATTCTTAGTTTTGTGACAATCTTTTTGATTTTTGAGTAGGTAAATGA
ATTACAAATAAGAATTCAAGAAAATAACAAAAAAATTAACAAAAATACCT
AAAAATAAATAATTTTTAATTATGAAAAAAAATTCTAAGAAAAACACAAG
AAAAATGATTTGATATAAAAAAGGAATAAATACTACAATAAATAAAATAA
TACAACAAATGCTATAGGGGCCGTCCATATAGTACGTACGCAAAGATTTT
CCAAAAATTTGATACCCCTCCCCATTGTACGCAGAGAACAATAGAAATGA
TGTCATTTAAACAATAGATGTACGCTATTGCTAAACCCCCTTCTTCCCCC
TTCACTACTACGTACGTACTATATCGATGGCCCCATATCCGCAGGTACGT
AAGTTTCCTGACGATAATGAAAACGAAAATGATGAAAGACGTTTCTAAAC
TCCTTGTCCTTTCTCTATTGATTTTATTTCTACATGAGACCATCCATAGA
AGACTTACACACACAATGAGTAACTAACTTTATCCATTGATGTCATTCAA
CGCAGATCTCTCCCGAGTTCATGCAAAAGAATTATGGATGTCTTTTACGA
ATGGTCCCAAAAGGTCAAAAAAATTACGTACGTATGGATAGGGGGTGGTG
GGACGACCTTAATTGCAAATTTCTAAATTGACAAACCTTAATAATCCTTT
GTTTATTATAAAATTCCACTTTATCCAAAATCCTATCCACAAATTTTCAT
TTTTTAGACAGACCTGCTAAAGACTTCCAAGTTTAATTAAACTATAAAAT
GAGACTCATATAATCACAAAATTAATAGGAGTGTATCTAATCATTGACTA
ACTTTTTGAAAGTCGCCAAAAAGAGAGGACTTTTCTTTCTTCCTGAAATA
TGGACCTCTCATAATTAAATCATCGGAGAGTTAAGATCACCCCTTGACCA
CCCCCAGATCAACCCCCTCCCTTGTACCCGCCCTTGACTCTGGCGGGCAT
GACTCAGCTAGCAGTCTCTGTTCTAGCAATCTCCGTTCTCGCATTTGGCT
GTAAGTGATAATTTGATGCCATCATGGTCTGACAAATTGACGCATTTACG
TATAACTTTGATATGATACTGGTTAGACAACTCCTTGTGCGTCCAAACAT
GATCGAGCATTTTCCCATCGATGTGTGTTGGAAAGCGCGGAAGCAAATCA
TAATCTTGAAGAATTTCGGCCAACAATTGATCATGATCCATTTCGAAGCC
GTCCATGTTGAAGTCTCCTAAAATAATATCAATTGTGTATCTTTCAATAA
ATTGAGCAAGACTGTAACAGAACACATCACGTTGAATTCTAGAGCCTTTA
TAGAGAACCAAAACACAAAATTCCTTTTCAGTAAATTCAGCTTTTCTAAA
TTTTACAAGAGAAAAGCATGATGAATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043978-exon-sc0004802-1575043694:4892..5049 | TCONS_00043978-exon-sc0004802-1575043694:4892..5049 | Clytia hemisphaerica | exon |
| TCONS_00043978-exon-sc0004802-1575043694:2371..4384 | TCONS_00043978-exon-sc0004802-1575043694:2371..4384 | Clytia hemisphaerica | exon |
| TCONS_00043978-exon-sc0004802-1510915933:4892..5049 | TCONS_00043978-exon-sc0004802-1510915933:4892..5049 | Clytia hemisphaerica | exon |
| TCONS_00043978-exon-sc0004802-1510915933:2371..4384 | TCONS_00043978-exon-sc0004802-1510915933:2371..4384 | Clytia hemisphaerica | exon |
| TCONS_00043978-exon-sc0004802-1491911889:4892..5049 | TCONS_00043978-exon-sc0004802-1491911889:4892..5049 | Clytia hemisphaerica | exon |
| TCONS_00043978-exon-sc0004802-1491911889:2371..4384 | TCONS_00043978-exon-sc0004802-1491911889:2371..4384 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004802 | supercontig | sc0004802:2371..5049 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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