TCONS_00043950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043950
Unique NameTCONS_00043950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043950 ID=TCONS_00043950|Name=TCONS_00043950|organism=Clytia hemisphaerica|type=transcript|length=1351bp
TGTTGTTCCATTTTTCCAGGACTTTCTGTTTGATGTTTCTGTCTTTATTG
TTGTGTAGCACCAGTGTTACCATGTGACCCAAGACCGCATCAAATATCTG
TAATCACAACAACCAAACATCCGGTCGGAAGTTCGCCGGACTCCAACACG
TTGAATATTTCAACTGAAGAATTCTTCCCTTTTTCCTTCTTCTGTTATTT
CGATACACACATTCGTGGAGCAAGATTCCCGCACGTCGGTTGTTGCAACT
ACGAGGAAACTTTACAAGTAGAGGCATCCCGAAAACACGACAAACCGGGA
AAACCGATTGCATATCGGGGAACATTGGATAAGAAAGTCCCACCACCTTC
CGCTGAAGCTGTTGAACTCCGAACGGGTGAATGGAAACCGNCGATTGCAT
ATCGGGGAACATTGGATAAGAAAGTCCCACCACCTTCCGCTGAAGCTGTT
GAACTCCGAACGGGCGAATGGAAACCGATTTACGATCGAATCGGAATGGG
ATCGGGAAAACcgacttttgttttgttttggacaAAATGGTGTCGTGCTT
CAATTCGTTTGATGAACTTTTTGACGAAATATGCTGAAGAAAATGGGCAA
GATTTTGCATTTGTCACCTGCTGTACACACAGTGGAGAATCTACGAAAAC
GCACCTCCATAAACTGAACGAGACTTTCGAACAACATGGATGGTCAGATA
TGTCGAGCGTACGCCACTTGTGCGCGTGCGAACAAAATATGGACGCGCAC
CTCATCAGACGACGTTTATCCGTGAACCGGTTTGCGTTGAGTACAACGGC
CGAATTGTTCGGTGTTGTCGGTGTACCTTCAATCATGGTTATCGATAAAG
ACGGTATGATCTCATGGCAAGGACGTTATTGCGCACTGAACTATAACTCC
TTCTCCCTTTTCATGCGACACTTATACAGCACCGTCATGCGTTTACCGTG
CGACGTTCATGATTGCGTCACGTGTTCTGCGGAAGCTCACCAAGACTTTA
AACACACTGAAGATTTACTTCCTTCTCAAGGTGCAGAGTCTACCACCTAC
AAACCCAACTTATTCCCCGCTTTCACACCAAGCGGACGCAGCAAGAAAga
cattaaaaagaaattaaaatccaGACACCGTGGTGCTTCAGATAAAGGCT
CTTCACCGCGGGAGCTGGCGATGAGACACATTGCCATGGCAACCACGCCA
CGCGTGCAAAATCCTTACGAGGAAGAATTCATAGAGGAAATTTTCCTCCC
AAAGGAAACAAAAACGAATAAGGGTTCAGGTAAGGGCGCTAAGAGCGCCC
TATTTCCCTACATTCCTCAATCACCACCCACCCGCCCGAAAAGAATTCGA
A
Run BLAST on NCBI

transcript from alignment at sc0004762:1..4840-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043950 ID=TCONS_00043950|Name=TCONS_00043950|organism=Clytia hemisphaerica|type=transcript|length=4840bp|location=Sequence derived from alignment at sc0004762:1..4840- (Clytia hemisphaerica)
TGTTGTTCCATTTTTCCAGGACTTTCTGTTTGATGTTTCTGTCTTTATTG
TTGTGTAGCACCAGTGGTAGGAAGTTTTTTGTTTCTTTTTGTTTCTTGCC
GTAGATAAGTTCATATCTTGTTTTGGTCATGGCTTTCTGGATATTCTGCA
AAATGATTTGAAGAGGGTAGCCTCTGGCTAGAAGATTTCTTGAGAGATTT
TTGAGTTCTTTATTAAGGGTACAGTTGTCGCTGATGATGGTGTTGTAACG
AATGGCTTGAGAGTAAACGATACCTTCCTTTACGTGTAGTGGGTGGTTAG
AGTTAAAGTGTAGGATCATTGATCTGTCAGTTGGTTCATCTGTCATCTAT
AAATCTGTGCCATGCCACGATGTTGTCGTTGAATTGGTTTATAATTCTTT
GCTCAATTTGGTGCATGAAGATATTTGCATATTGCGGGGCATACCTGCCT
CCCATGGATGTACCGCTTATTTGTAAGTAGTGGTCATTTTGGAATCGAAT
GTTACTGTGTTTGAGGATAAATTCTAAGATAATTGTGATGGTTGCCGTGT
TGGGGGCATCTGGTGGTAGGATATGAAGAGATTCTTTGTAGTATTTGGAA
ATTGTTGCTATACCTTCTTCATGGGGGATATTTGTATATAATGATGATAC
GTCGGCTGTAACCATGATCATTTCTGAATGAGGGAGGATGATATTGTCTA
GGATTTGTAGCATGTGTTTAGTGTCTTTGATTTAGGTTGGGAGGTTTTCT
ACTATTGGTTGAAGATGGTGAGCGATGAATCTCGATAAATTATCTGTGGG
GCTGTCGAAACCAGAGACGCAAGGACGTAATGGTGTTAAAGGTTTATGAA
CTTTTGGAAGGCCATAGAAGATAGGAGTACGTGGTTCGTGTAGTGGAAGG
AGGTATTTTTGGATGTTGTGGTCGATGTAGTGTTTCTTGTATAAATAATC
GATCATGGATCTGACATCGTGGGTGATGTGAGGAGTTGGATCAAAATCTA
GTTTTTTATAGACGTCTGAGTTTAAATGTTCTATGTAGATTTTATTAATG
TAGTCTTGACGGTCAAGGAGAACAATCCCACCACTATTATCGGCTTTCTT
TATGATCAGATCGTTATTGTTTTTTAGAGATAGAAAGGCTTCCAAGAAAT
ACTGGTGATCTTTGTTGCTTGCCTTCTGTGTTGGGGGTAGGATTTGAGTG
TTTTCGAGCTGATTGAAGAATTCTTCTAAGGTAGCGTTATCATTGGGTGG
TGGGTTCCAGTCGATTTGAGTTTTTTTGGGAAGTTTTTTTGATGTTTGGT
TTGGGTTTTGGTGTTGTAAATTTGTTTCGTTGTTGTTGTTTTTATCGTGA
AAGTAAAGTTTGAGGTTGACTCTTCTTTTTAGGGTGGCGATAACTTGTTG
AGGGACGGATTTCCTTTTGAAAAAGGTATCTTCGGGGAGTAATTTAGTCC
TTTTGTCAGTACGTTTTTTTCTCCTTCCGTGAGGATATGGGTAGAGAAGT
TGTGGATAAGGTTTTGGTTGAATGTGTTGGTGTGTTGTTTGATGATTGTT
TTACGACGGGTGTTTTCGGGAAGTTTGTTTTGATGCCAGAGTTTTGAATT
GGGGAGTAGATCATGTAGTGAAGGTTTCTTGTATGATCTTTTAGCATCAG
GTATTGGTTTCATGTTGAGCTGAAGCTAGTGAAAAGAATGTGTAATATGA
ATTTGTGAGTGGATGGTATTTGCAAAGATGGTATCCAGTAGGCGTGAACC
AGTGCAATGAATAGAAAATGAATAGAGTGCTTTAGTTGATGTATAGTAGT
ACGACTTAAAATGTACTTAGTTCCAAACTTAGGTCCACACTTATCAATAC
CAACTTATCATGTAGAGTATTCCGGATAGAGATTAAGAATGGATTCTCAT
TCAGAATTTGGAATATAAAGATCCTTTCTGAAGTGGGTACGAGTATGCAC
AATGAGATGAAAAGGGGATAAAGAAACTTTTTGGAATAAAAGATAATGAG
GAATACAATAGCTTTTGGAAATAATGAGAATGTATTTTTAGTGAACATCT
ATAAAACTAATTAGTATAATGCATATTAACATGGTGAAAATAGAAATTTG
TGAGTGTGGTGGTTTGATTTATAGTAAATGTGACGGGGTGACGAGGATGT
GGCGTTCAGCAGCGTTCGCATAACGTTTGATGAATCTTCGAATGTTAGGT
GGATTTGGTGGTAATGGTCTTGTTGGTGGTAGTTGTTGTGGTTGTGGTTG
TGGTTATGATACTTGTTTTTTCTTGGAGTTTCGGCATATTCAATTCGAAA
ATTTCATCGTCCGTGATTGTGAAATCGAATTCTTATGAAGCGGACATCTG
AGGAGATAAAAATTGATTTAAAGGATTGTGTTGGTTCCTACCAAGTTGGT
ACATTGAGGCAGTTTTTTTGTAGTATAGAGTGGCAGAGAGAGATAGAGAG
AGTGAGAGAGAGAGGTAGAAGAGGAATGATTTAGGAACAAAAGAGAGTTT
TCTCTCAGAGATAAGAGTCAAGAATACTTTGTAATTCTGAAGTATTGGTT
TAGAGTGTATGAAGAAATTTCTACTTCTATTACTTGAAACATGCACAGTA
AAAGAATAAAGGAATCCAGTCGTTACATGCATTGTTGCAAATATGCAAAA
TTCACTATGGTCTAACGATATAGAATCTTCAATGAAAAAAATTAACTTTC
TTTCGAAATTTGTGAAATTTTGTACCTAATTTCATGAATGTCTATGTCGT
TTTCTTCAGTTACCATGTGACCCAAGACCGCATCAAATATCTGTAATCAC
AACAACCAAACATCCGGTCGGAAGTTCGCCGGACTCCAACACGTTGAATA
TTTCAACTGAAGAATTCTTCCCTTTTTCCTTCTTCTGTTATTTCGATACA
CACATTCGTGGAGCAAGGTATATTTAATTGTTCTCAATCTCGGCCCCAAT
CTCATTTGTCACTTTAGTTTTTTATTTGAAGTTAATCGTTGCATTCATTT
AGTTTGCTCTCAACCGTATTTCGTCGTTTTTGATTGATCACTTCAGAGAA
TGAAGAATCTTTGAAAGAACAGCCAAAACATTTTTAAATCTAAAATCTTG
ATAATTTAATGTAGTAGTATCAAAATTTCTTTTACGCCAGTGGTGAAAAA
ATCTGCACTTTTCGCAAAGACCGACTTTATAATTTAAGTGTTGCAGCCCG
AAAAGTTGGGTGCTTTTTCTGTAGTATTTATTTATCATATACAAAACTGC
TTCATATTTTATATTTCAGATTCCCGCACGTCGGTTGTTGCAACTACGAG
GAAACTTTACAAGTAGAGGCATCCCGAAAACACGACAAACCGGGAAAACC
GATTGCATATCGGGGAACATTGGATAAGAAAGTCCCACCACCTTCCGCTG
AAGCTGTTGAACTCCGAACGGGTGAATGGAAACCGNCGATTGCATATCGG
GGAACATTGGATAAGAAAGTCCCACCACCTTCCGCTGAAGCTGTTGAACT
CCGAACGGGCGAATGGAAACCGATTTACGATCGAATCGGAATGGGATCGG
GAAAACCGACTTTTGTTTTGTTTTGGACAAAATGGTGTCGTGCTTCAATT
CGTTTGATGAACTTTTTGACGAAATATGCTGAAGAAAATGGGCAAGATGT
AAGAAGGATATTGTCTCCTCTGTCCCTCATATTTTTATCTACCACCTTAT
CTGTAAAAATCACTATGTGCCAGAGTGTACCTGGCGTTTATCCCTTGCTG
TTCAAATAAGTAAATATTGTTTGTTTTGATAGTTATATGTGTGCAGAATT
GTAGTGTTTCAGAAAAATCAAAAAAAGCAACAAAAAAAAACAAACATATC
ATTAAAACTTTTATCAATAAAATAAAATTTACTTGACCGTTATTATCTCC
TTTATCTACAGTTTGCATTTGTCACCTGCTGTACACACAGTGGAGAATCT
ACGAAAACGCACCTCCATAAACTGAACGAGACTTTCGAACAACATGGATG
GTCAGATATGTCGAGCGTACGCCACTTGTGCGCGTGCGAACAAAATATGG
ACGCGCACCTCATCAGACGACGTTTATCCGTGAACCGGTTTGCGTTGAGT
ACAACGGCCGAATTGTTCGGTGTTGTCGGTGTACCTTCAATCATGGTTAT
CGATAAAGACGGTACGTTTTCGTCTCACTTTGGGGTTGTATCATCATTTG
ACAAGATCGTACAGAGTATTCCCAACTTATGCAGCGAAAGTTACACCAAA
TCTTTTATGAAATATTCATGAAAGCATAAACCTTGCTTTACTTTTGAAAC
TCTCAATAATAATTCTGTTAAATTTTTTTTCATCTTTCTCAGGTATGATC
TCATGGCAAGGACGTTATTGCGCACTGAACTATAACTCCTTCTCCCTTTT
CATGCGACACTTATACAGCACCGTCATGCGTTTACCGTGCGACGTTCATG
ATTGCGTCACGTGTTCTGCGGAAGCTCACCAAGACTTTAAACACACTGAA
GATTTACTTCCTTCTCAAGGTGCAGAGTCTACCACCTACAAACCCAACTT
ATTCCCCGCTTTCACACCAAGCGGACGCAGCAAGAAAGACATTAAAAAGA
AATTAAAATCCAGACACCGTGGTGCTTCAGATAAAGGCTCTTCACCGCGG
GAGCTGGCGATGAGACACATTGCCATGGCAACCACGCCACGCGTGCAAAA
TCCTTACGAGGAAGAATTCATAGAGGAAATTTTCCTCCCAAAGGAAACAA
AAACGAATAAGGGTTCAGGTAAGGGCGCTAAGAGCGCCCTATTTCCCTAC
ATTCCTCAATCACCACCCACCCGCCCGAAAAGAATTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027613XLOC_027613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043950-exon-sc0004762-1575043694:4775..4840TCONS_00043950-exon-sc0004762-1575043694:4775..4840Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1575043694:1924..2081TCONS_00043950-exon-sc0004762-1575043694:1924..2081Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1575043694:1193..1571TCONS_00043950-exon-sc0004762-1575043694:1193..1571Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1575043694:680..929TCONS_00043950-exon-sc0004762-1575043694:680..929Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1575043694:1..498TCONS_00043950-exon-sc0004762-1575043694:1..498Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1510915933:4775..4840TCONS_00043950-exon-sc0004762-1510915933:4775..4840Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1510915933:1924..2081TCONS_00043950-exon-sc0004762-1510915933:1924..2081Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1510915933:1193..1571TCONS_00043950-exon-sc0004762-1510915933:1193..1571Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1510915933:680..929TCONS_00043950-exon-sc0004762-1510915933:680..929Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1510915933:1..498TCONS_00043950-exon-sc0004762-1510915933:1..498Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1491911889:4775..4840TCONS_00043950-exon-sc0004762-1491911889:4775..4840Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1491911889:1924..2081TCONS_00043950-exon-sc0004762-1491911889:1924..2081Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1491911889:1193..1571TCONS_00043950-exon-sc0004762-1491911889:1193..1571Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1491911889:680..929TCONS_00043950-exon-sc0004762-1491911889:680..929Clytia hemisphaericaexon
TCONS_00043950-exon-sc0004762-1491911889:1..498TCONS_00043950-exon-sc0004762-1491911889:1..498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004762supercontigsc0004762:1..4840 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.440689	0.446445	0.211656	0.273907	8.64257	6.15466	1.7801	2.16089	1.63809	1.91873	1.26629	2.0439	2.46361	1.63679	0.296688	1.01506	0.767022	1.07283	4.09773	4.67547	2.48609	1.93153	0.810994	1.51008	3.1297	4.42712	1.7248	1.03592	2.34203	1.54459
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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