TCONS_00043930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043930
Unique NameTCONS_00043930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043930 ID=TCONS_00043930|Name=TCONS_00043930|organism=Clytia hemisphaerica|type=transcript|length=263bp
GGGATTTTTCCAAGCACTTTGAGCTACTACcgtttttctataatttgatt
GAGTTTCAGATGCGGAACATAACGCAAGCGTAGCGAGCGCAATTTAGAGC
TGGGGGTCGGGGGCGCTCTAAGCCCCCCTGCGGGGGTTCTAGGCGGCGGA
GCCccctaagaaaattttttacttcaaatttggccctggattgctttaaa
caagaacaaaaagtgaaaacattAACGCCGCTTAATTAAAAGTAGAAAGG
TTTTCGCTCATTT
Run BLAST on NCBI

transcript from alignment at sc0004741:5489..5751

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043930 ID=TCONS_00043930|Name=TCONS_00043930|organism=Clytia hemisphaerica|type=transcript|length=263bp|location=Sequence derived from alignment at sc0004741:5489..5751 (Clytia hemisphaerica)
AAATGAGCGAAAACCTTTCTACTTTTAATTAAGCGGCGTTaatgttttca
ctttttgttcttgtttaaagcaatccagggccaaatttgaagtaaaaaat
tttcttagggGGCTCCGCCGCCTAGAACCCCCGCAGGGGGGCTTAGAGCG
CCCCCGACCCCCAGCTCTAAATTGCGCTCGCTACGCTTGCGTTATGTTCC
GCATCTGAAACTCaatcaaattatagaaaaacgGTAGTAGCTCAAAGTGC
TTGGAAAAATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027596XLOC_027596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043930-exon-sc0004741-1491911889:5489..5751TCONS_00043930-exon-sc0004741-1491911889:5489..5751Clytia hemisphaericaexon
TCONS_00043930-exon-sc0004741-1510915933:5489..5751TCONS_00043930-exon-sc0004741-1510915933:5489..5751Clytia hemisphaericaexon
TCONS_00043930-exon-sc0004741-1575043694:5489..5751TCONS_00043930-exon-sc0004741-1575043694:5489..5751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004741supercontigsc0004741:5489..5751 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.76525	1.2239	0.710535	3.47574	1.69255	3.34369	1.61361	3.7766	1.05763	3.93015	0	0.835878	2.50415	0.866861	1.42536	1.52962	0.942186	0	0.667091	1.39612	1.21349	0.887844	0	0	1.34753	0	0.860484	0.918332	0	1.41929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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