TCONS_00043922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043922
Unique NameTCONS_00043922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043922 ID=TCONS_00043922|Name=TCONS_00043922|organism=Clytia hemisphaerica|type=transcript|length=245bp
NNAATTACTAGAACTAATATGTCCAGGGACactgcttgtcgccatttttc
ATTGGATTAGATTTGTGTGAGATTAAAATGTGGCAAAAGTTGtggaaaat
tctcaaaaaatattttttatcatcCGCCATTAACTGCCTCCCTGCTAGAC
GTCTGAGTCGCTGTCGTGCTGTGTGCTTCGCTTGGAAATTTACTTGCTCA
GAAAACAAAAATGACTCAGCGTGGTAATGTATGGGAGATTGTGTG
Run BLAST on NCBI

transcript from alignment at sc0004733:3300..3544

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043922 ID=TCONS_00043922|Name=TCONS_00043922|organism=Clytia hemisphaerica|type=transcript|length=245bp|location=Sequence derived from alignment at sc0004733:3300..3544 (Clytia hemisphaerica)
CACACAATCTCCCATACATTACCACGCTGAGTCATTTTTGTTTTCTGAGC
AAGTAAATTTCCAAGCGAAGCACACAGCACGACAGCGACTCAGACGTCTA
GCAGGGAGGCAGTTAATGGCGgatgataaaaaatattttttgagaatttt
ccaCAACTTTTGCCACATTTTAATCTCACACAAATCTAATCCAATgaaaa
atggcgacaagcagtGTCCCTGGACATATTAGTTCTAGTAATTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027589XLOC_027589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043922-exon-sc0004733-1491911889:3300..3544TCONS_00043922-exon-sc0004733-1491911889:3300..3544Clytia hemisphaericaexon
TCONS_00043922-exon-sc0004733-1510915933:3300..3544TCONS_00043922-exon-sc0004733-1510915933:3300..3544Clytia hemisphaericaexon
TCONS_00043922-exon-sc0004733-1575043694:3300..3544TCONS_00043922-exon-sc0004733-1575043694:3300..3544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004733supercontigsc0004733:3300..3544 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.830086	0.809465	5.6392	15.6317	5.59709	7.07663	1.06721	5.99463	0	0	0	0.552833	1.10413	2.2933	2.8281	1.51749	0.623142	2.5548	0	0.923368	3.2103	0	1.90352	5.19173	7.12981	5.56779	0	1.21473	0.921331	3.75476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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