TCONS_00043916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043916
Unique NameTCONS_00043916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043916 ID=TCONS_00043916|Name=TCONS_00043916|organism=Clytia hemisphaerica|type=transcript|length=535bp
GAAGAAGGCTACTGAGGCGGATATGAGTAAATATGCAAAGAGTaaaacgt
gcgcaacgcactcaGTTAAACTTCAgtagcttcaaattattcaaaggcca
aattttagcaaatcaaacaaaaaagctAGTGCCCAGatcccaaaaatctt
tttttataagaatgaaaaaaccccagatattcacccaaggaacaagtgtg
ccaaatttcagccaagtCTGATCGTTTTTGAAGTCTCAAGGCTGCGCCAA
GATTTTTTCTCAGAGAAAGGAGTTTCTCAGTTTCctgctcaactgaagtt
gagaattaatATTACACTTAAGATATCTTCATTTATGACCCAGGATCAAT
TTGCTTACAATTTTCTTTGAGGAGACCCTGCTTCTTCCGTGTTccattca
gttcatagataggtgAATCAGCTAGTCGTAAACTCCGTCAAAAAACCCCC
ATCAATGTCAGTTGATTATCACCCTGGTGTGTAAGCTggcttgttttgaa
ttttgagattGATATTTTTCCCCATCATCTttgat
Run BLAST on NCBI

transcript from alignment at sc0004727:4697..5231

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043916 ID=TCONS_00043916|Name=TCONS_00043916|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at sc0004727:4697..5231 (Clytia hemisphaerica)
atcaaAGATGATGGGGAAAAATATCaatctcaaaattcaaaacaagccAG
CTTACACACCAGGGTGATAATCAACTGACATTGATGGGGGTTTTTTGACG
GAGTTTACGACTAGCTGATTcacctatctatgaactgaatggAACACGGA
AGAAGCAGGGTCTCCTCAAAGAAAATTGTAAGCAAATTGATCCTGGGTCA
TAAATGAAGATATCTTAAGTGTAATattaattctcaacttcagttgagca
gGAAACTGAGAAACTCCTTTCTCTGAGAAAAAATCTTGGCGCAGCCTTGA
GACTTCAAAAACGATCAGacttggctgaaatttggcacacttgttccttg
ggtgaatatctggggttttttcattcttataaaaaaagatttttgggatC
TGGGCACTagcttttttgtttgatttgctaaaatttggcctttgaataat
ttgaagctacTGAAGTTTAACtgagtgcgttgcgcacgttttACTCTTTG
CATATTTACTCATATCCGCCTCAGTAGCCTTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027583XLOC_027583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043916-exon-sc0004727-1491911889:4697..5231TCONS_00043916-exon-sc0004727-1491911889:4697..5231Clytia hemisphaericaexon
TCONS_00043916-exon-sc0004727-1510915933:4697..5231TCONS_00043916-exon-sc0004727-1510915933:4697..5231Clytia hemisphaericaexon
TCONS_00043916-exon-sc0004727-1575043694:4697..5231TCONS_00043916-exon-sc0004727-1575043694:4697..5231Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004727supercontigsc0004727:4697..5231 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.558217	0.662192	0.793516	0.405054	0.63484	0.125314	0.630256	2.29131	0.778688	1.06896	0.454206	0.159677	2.34756	3.85952	2.38648	1.46958	0.347224	1.39333	0.605427	1.07897	0.346149	0	0.130841	0.121505	1.58575	3.19233	0	0	0.405846	0.795607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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