TCONS_00043911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043911
Unique NameTCONS_00043911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043911 ID=TCONS_00043911|Name=TCONS_00043911|organism=Clytia hemisphaerica|type=transcript|length=640bp
CAGAGTCAAAAAAGTAATattatttcccttttttcgTATCTAGTATAAAG
TCAACAAACCAACTCGAACGTAATTATTTAGgtttcaaaaagatttcaaa
tagATTCGTTGGCACAGCATTCACAGGTGGTGTCAACATATCTTTTGACG
ATACTGGCAGATGAGTAAATAAATCATATTACCAAAGACTAATAAAAAAA
CGATTATATTTTCATCTAACAAAATGTACTAAAGATCATATTAAAAAATA
GTTTGGTTTGTAAGGAGGGCTATACCGTTGAGTGTTTTTGTatagttttt
tatcaattttggaTATTTTCCTGGTACGGTAATGGCTAGATTACTGGTCA
TTGCTTGTGTGTGTTTGGTTGCTATAGTGACAGCCCAGCCTCATTGTCGA
GATCAACCAATAGGTGCTGAAAATGGAAGATTGAGAGACGATCAATTTGT
TGCTTCAAGTGAACACAACGAATATCATGGTGCTCACTTAGCTCGTTTGA
ATGGTGGTAACGCTTGGTGTTCAAATGAAACTGATCCAAAGCCTTTCATC
AAGGTTGTTCTTGACGGGGAGTATGATATTTACGCGATAGCAATCCAAGG
ACGTGAACATAAGCGATACAGCGGGTGGTACGTCACGCGA
Run BLAST on NCBI

protein sequence of TCONS_00043911-protein

>TCONS_00043911-protein ID=TCONS_00043911-protein|Name=TCONS_00043911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MARLLVIACVCLVAIVTAQPHCRDQPIGAENGRLRDDQFVASSEHNEYHG
AHLARLNGGNAWCSNETDPKPFIKVVLDGEYDIYAIAIQGREHKRYSGWY
VTR
Run BLAST on NCBI

transcript from alignment at sc0004721:554..5802+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043911 ID=TCONS_00043911|Name=TCONS_00043911|organism=Clytia hemisphaerica|type=transcript|length=5249bp|location=Sequence derived from alignment at sc0004721:554..5802+ (Clytia hemisphaerica)
CAGAGTCAAAAAAGTAATattatttcccttttttcgTATCTAGTATAAAG
TCAACAAACCAACTCGAACGTAATTATTTAGgtttcaaaaagatttcaaa
tagATTCGTTGGCACAGCATTCACAGGTGGTGTCAACATATCTTTTGACG
ATACTGGCAGATGAGTAAATAAATCATATTACCAAAGACTAATAAAAAAA
CGATTATATTTTCATCTAACAAAATGTACTAAAGATCATATTAAAAAATA
GTTTGGTTTGTAAGGAGGGCTATACCGTTGAGTGTTTTTGTatagttttt
tatcaattttggaTATTTTCCTGGTACGGTAATGGCTAGATTACTGGTCA
TTGCTTGTGTGTGTTTGGTTGCTATAGTGACAGCCCAGCCTCGTAAgtta
ctttcaattttttgacgatGGTCTTTGTGTAAGAATAGAATAGACTTTTT
CCCTCCAGGTTATTATCAATAAGTGAGTGAACTTTTGGTACCCAAGGAAT
CAACAACGATAAAAGTAATGGTTAAANTAGAATAGACTTTTTCCCTCCAG
GTTATTATCAATAAGTGAGTGAACTTTTGGTACCCAAGGAATCAACAACG
ATAAAAGTAATGGTTAAAGTActtaaataaagaaaacaacagaagaaaaa
aaaaggagTTATTTTGCGTCTTGGTTCCGTCTCAGCCACTTTGAAGGGTA
TAGTGAGGCTTTCGTGCGAcgcttcaaaattatttttatgttGCCCTTAA
AAATCTTCTCCCTACTTTTAGAAAAACTCTCTCTGGTTATTGCtattttt
atgaaaactttGTTTAAGAATGCCGGACGGAGTTCAATTTTACGGTATGT
TATAATGACAATATTTTTCTACTTTTAGATTGTCGAGATCAACCAATAGG
TGCTGAAAATGGAAGATTGAGAGACGATCAATTTGTTGCTTCAAGTGAAC
ACAACGAGTAATTTTCTTCTCTTTGTCATCCTAAATTTTTGTTACCCAAA
AACTCAACAAACTCTGCATAACTTTCAAGTCCATTAATCcaggtcaaaat
cgaaaattttccggcccctcggcgcaaaccatggttgcgcctccttagtc
attatatttttgttggccccctcactttcaaaatcgtggCGCGGGCCCTG
CTGTAACCTTTGATAAATTTAAAACTTCCCGAGATTATTTCTCGATATAA
TTATGGTCTGTGACAGATTGATACCTTAGCCCTTCTATCTTGGGGGTGGT
CTAAACGAATTTTTTGATgccttttgaaatatttatccgaTCGACTTATA
ATTTTGCAAGtgttagtagagggcattttgtaaaatcgctcgactgtttt
gttagaagcacttgttatacatttttggaaagctaaaggggtaggggaat
cgaaattactatgtttccaattttttttcggacactttggtgtgattttc
ggacaaatatgacggtctcaggcaaaaatcataggNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTAGGTGATTTCAGttcctaactcgag
atattgagcttcaaaaagcgcaaaaactggacaaaatagctgtttctggc
tgaaaacacggttttcaagggttaatatctcgagtNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCAAAATTTGCCACCTGTTGG
tgtcgtgtattttacagaccggacAAAATTGCCTTTTTTGCCTAAACAGC
CCTAGGATACTGCATCTACAGATTGGAAAATGCTTTGGACCTGAGATTTT
GACAAGTgttaggcattgataatacaagctTGCAACCAAAATCTCAGCAA
CATGAGACAATCggttatgctgaaagtgagcattttggGTAAAATacgga
ccggtctgtaaaataccaaccattCACGTgatgaaatttatattttgcac
ACTGTTATGGACGGTCAATATCtatcactggtgaaaatttcaagtaaaag
cTCCGGTAGTTCCTGAGTTCCGACAAGTTGTcatcgtgtattttacagac
cggtctgcaaagtaccaaatactcACGGGGACAAATTTTTTCTGTTACTA
GTCTATTTTAATTGACAAATCAGCTTTAAGAAACAAATTTCAGTTAAATC
GAATtagtcaatcagtcaatacatgattttgGTAAAGTTCACATTCTGGT
CTGTAGAATACCAACTAGACAGGTGACCGAACCAGATTTTGTAAATTATC
TTCAATTATTCATATCtaccactggtcaaaatttcaaggtcatagcCAAT
GTCAATCATGAGATTTTAAGAGGGGCcttgagcccccccccccaagatgc
ttcccctagtaaaaaataggaagatgctcgaagggttacatataccttaa
gtggattaattttaatATGGATTTGATTTTGCGATTGATCAACTTATTGG
GAATTTGGAGATTAGATTGGTTAGGGAGTTAATTTTGTGAATGGTCGATT
TTGAacttttggcgggaatttaattttgtataatattttttgaatattgt
AGCATTAGCAACAACAGACTGAAAGTCTTTTACGTCTTTTCTAGATATCA
TGGTGCTCACTTAGCTCGTTTGAATGGTGGTAACGCTTGGTGTTCAAATG
AAACTGATCCAAAGCCTTTCATCAAGGTATAACTggtgtacaattattgt
cagaatttttggcaaaaatggaATTTCCCTGCAAAAACTGCAACGTAGCT
TTTAAGTGTCTTATTTAACTATGGTTTGGAAAGTACAGTTTTAAAATGAG
ACTTCTGAAGATCCAAAAAAAACTTGTGAATGATCCGACTAGGCTGAGAT
TATAGCCTGAAAGCCATTAtgcccctcccaaatcgaaatatcTGATGATG
AAGTGGAAAGTCTGAAAATGTCATTCTCGCCCGAATTTTAAATTCTCCAA
AACGCAGAAAATAACCAGAAATGCCAACATAttctgaccatgattgtagc
accTAAGAATTAAACTTTGAACAACATAGAGAGCTCAATACAAAAATATT
CACTGAAATTTTACGCATCTGTTTCTTCAGTAAATACTTACTTGAGTGtt
aattttttctcaaagattttaatttttctaacaaTGGTTAAGAAACGGTT
GATTACTTCACTGATACCAACATTTGGTAATTTCCGTTGGGTTAGTAAGT
TTTAACAACATCACCCAGaaagaaaatgccaaaatatTCTATGATGTGCA
TTTTAACCATAGGTTGTTCTTGACGGGGAGTATGATATTTACGCGATAGC
AATCCAAGGACGTGAACATAAGCGATACAGCGGGTGGTACGTCACGCGA

Coding sequence (CDS) from alignment at sc0004721:554..5802+

>TCONS_00043911 ID=TCONS_00043911|Name=TCONS_00043911|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0004721:554..5802+ (Clytia hemisphaerica)
ATGGCTAGATTACTGGTCATTGCTTGTGTGTGTTTGGTTGCTATAGTGAC
AGCCCAGCCTCATTGTCGAGATCAACCAATAGGTGCTGAAAATGGAAGAT
TGAGAGACGATCAATTTGTTGCTTCAAGTGAACACAACGAATATCATGGT
GCTCACTTAGCTCGTTTGAATGGTGGTAACGCTTGGTGTTCAAATGAAAC
TGATCCAAAGCCTTTCATCAAGGTTGTTCTTGACGGGGAGTATGATATTT
ACGCGATAGCAATCCAAGGACGTGAACATAAGCGATACAGCGGGTGGTAC
GTCACGCGAATGGCTAGATTACTGGTCATTGCTTGTGTGTGTTTGGTTGC
TATAGTGACAGCCCAGCCTCATTGTCGAGATCAACCAATAGGTGCTGAAA
ATGGAAGATTGAGAGACGATCAATTTGTTGCTTCAAGTGAACACAACGAA
TATCATGGTGCTCACTTAGCTCGTTTGAATGGTGGTAACGCTTGGTGTTC
AAATGAAACTGATCCAAAGCCTTTCATCAAGGTTGTTCTTGACGGGGAGT
ATGATATTTACGCGATAGCAATCCAAGGACGTGAACATAAGCGATACAGC
GGGTGGTACGTCACGCGAATGGCTAGATTACTGGTCATTGCTTGTGTGTG
TTTGGTTGCTATAGTGACAGCCCAGCCTCATTGTCGAGATCAACCAATAG
GTGCTGAAAATGGAAGATTGAGAGACGATCAATTTGTTGCTTCAAGTGAA
CACAACGAATATCATGGTGCTCACTTAGCTCGTTTGAATGGTGGTAACGC
TTGGTGTTCAAATGAAACTGATCCAAAGCCTTTCATCAAGGTTGTTCTTG
ACGGGGAGTATGATATTTACGCGATAGCAATCCAAGGACGTGAACATAAG
CGATACAGCGGGTGGTACGTCACGCGAATGGCTAGATTACTGGTCATTGC
TTGTGTGTGTTTGGTTGCTATAGTGACAGCCCAGCCTCATTGTCGAGATC
AACCAATAGGTGCTGAAAATGGAAGATTGAGAGACGATCAATTTGTTGCT
TCAAGTGAACACAACGAATATCATGGTGCTCACTTAGCTCGTTTGAATGG
TGGTAACGCTTGGTGTTCAAATGAAACTGATCCAAAGCCTTTCATCAAGG
TTGTTCTTGACGGGGAGTATGATATTTACGCGATAGCAATCCAAGGACGT
GAACATAAGCGATACAGCGGGTGGTACGTCACGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027578XLOC_027578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043911-exon-sc0004721-1491911889:554..945TCONS_00043911-exon-sc0004721-1491911889:554..945Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1510915933:554..945TCONS_00043911-exon-sc0004721-1510915933:554..945Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1575043694:554..945TCONS_00043911-exon-sc0004721-1575043694:554..945Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1491911889:1432..1510TCONS_00043911-exon-sc0004721-1491911889:1432..1510Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1510915933:1432..1510TCONS_00043911-exon-sc0004721-1510915933:1432..1510Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1575043694:1432..1510TCONS_00043911-exon-sc0004721-1575043694:1432..1510Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1491911889:5048..5129TCONS_00043911-exon-sc0004721-1491911889:5048..5129Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1510915933:5048..5129TCONS_00043911-exon-sc0004721-1510915933:5048..5129Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1575043694:5048..5129TCONS_00043911-exon-sc0004721-1575043694:5048..5129Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1491911889:5716..5802TCONS_00043911-exon-sc0004721-1491911889:5716..5802Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1510915933:5716..5802TCONS_00043911-exon-sc0004721-1510915933:5716..5802Clytia hemisphaericaexon
TCONS_00043911-exon-sc0004721-1575043694:5716..5802TCONS_00043911-exon-sc0004721-1575043694:5716..5802Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043911-proteinTCONS_00043911-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004721supercontigsc0004721:554..5802 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.65852	1.36023	0.652408	0.273548	0	0.350875	0.317487	0.213829	0.208096	0.60144	0.500376	0.493392	30.0387	31.7211	27.143	57.7068	9.10974	8.87168	94.327	99.0179	29.1388	38.5967	42.4265	67.3258	60.6715	80.8899	1.35444	0.843206	33.0601	43.5032
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR000421FA58C
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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