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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043896 ID=TCONS_00043896|Name=TCONS_00043896|organism=Clytia hemisphaerica|type=transcript|length=1308bp
TTCTGAATATAGTATAATAAATTAGGAAATATTTACTTAGGAATAAGTTA
GGAAATTCTGGGAAATTACATAATAAATTAACTTGAAAATAATGTATGTA
AATCGGAAAGAGAGTTCCATTTCcctataattttctttttaagctGAGAT
CACACCAGTACAAAAACCTGGAAagagttggaaaaaaatcaacgCTCCAG
ATCACGATTGGGATCAAAGTAGAACGTACGCTGTAACACCTATGACGCAC
ACGAAAGgacTACCCTCTGATCCTGAAAGAGAAAGATACAGTAGTAGGAA
ATGGTGGTtgtaaaattgtaacaaaaattATCAACTTATTTCCAAATCAT
CAAGCATCGTAAGAAAAAAGTATGGTAAAAATGATATagagaaaaagata
aaattcaAAAGATATCCAAGGATAATAAAAAAACTGaggttgaaaatgaa
gaatctTTAAAGTCCTTACCATGTTTGACTTTAGCTTTTCTTTTACTGAC
TTGTATAATNtttcaaaagatatcaaaggataataaaaaaactgaggttg
aaaatgaagaatctTTAAAGTCCTTACCATGTTTGACTTTAGCTTTTCTT
TTACTGACTTGTATAATGGTGGCAGGATAATAGTAGTTATCATATAGTGC
CAGAATGTCTTGATTGTCATGAAGTGATATTGTTTCCATTTCAGGAATAT
GTTCCATGTCCTTAACGGAAAGATAAGCATAATTTATTATAATAACCTTT
TAACGATTGGTAAATGACTCAGACTGCATCTTTTACTCTTTGCATTAATT
AATTTGCCTACTGTATAAAGTTGACGAAATAATCCTTATTATCCATAATA
ATTCAAAAGAGACACAAAACAAGCTGGTCAGCTAAAATAAGACTCAGCTA
TTCTTTCCTGGATAAGATGCCAGCTtggttttgtatttttaaaagtGGCT
GTACACCAGCACTttcaatttgttttcattttggcgcgtttgatagacct
tttgctaggcCGGATGTCATGTTGagtataaaaactccagcatcgAAAAA
ACATGACAACACGCCTAGCAAAAGATCTATTGTTGAGGGAGCTTTTGAAT
TGTTATGGTTAGGTACCGTGaggtcaggtaacttgcatcagtggagggta
acatgcataaccctcaaatgaatgacctggctggccATTAAAATgtatca
tttgttttgaaattttgctgcttcgattggtcagtcatttgagggctatg
catgttagcctccactgatgcaagttacgcGATCTTACGGTACTGCATAT
TCAGTATT Run BLAST on NCBI transcript from alignment at sc0004707:3735..5592+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043896 ID=TCONS_00043896|Name=TCONS_00043896|organism=Clytia hemisphaerica|type=transcript|length=1858bp|location=Sequence derived from alignment at sc0004707:3735..5592+ (Clytia hemisphaerica)
TTCTGAATATAGTATAATAAATTAGGAAATATTTACTTAGGAATAAGTTA
GGAAATTCTGGGAAATTACATAATAAATTAACTTGAAAATAATGTATGTA
AATCGGAAAGAGAGTTCCATTTCcctataattttctttttaagctGAGAT
CACACCAGTACAAAAACCTGGAAagagttggaaaaaaatcaacgCTCCAG
ATCACGATTGGGATCAAAGTAGAACGTACGCTGTAACACCTATGACGCAC
ACGAAAGGTACTATTTCAAGCTTCCTTCTTAAGAAACCTATTTTTCGCGA
TGGACACCCGTTTTTACCAAAATCTTTTTATACCCCAGGtattttgactc
aaaaacacaaaaattaattGCCTCATACTGATGCAATGATATGCGATTAC
CGACAGTTTATTTATCGCCAGTGACTATGATAGACTAGTCAACACTTCGT
TTGGTCGGGACTGATTATTGTTTGTTAGTTGGCATACATGGAAAGTTGTG
TAGAGATTTATGTGATATGGAACTTAAAAATACTGTACCCATAAAATCTT
TTTAGTATAATAATGAAAGATGTTAGCCTAAGAATAATCTTGAAAAAATA
ACGGGTTTTGCAAATTattaaaaagttaattttggcCATCCAAGAACTTC
ATTGGTGCCTGTATGCAATTTTAAGTTGTAAAACAGGTATTTATTGgaaa
aattctctcaaaattaaaaaaaaattactataaTTAACCTTGTAATGTTG
AATTGGTTTTTTCAAGTTCTTTGGGGTTACCCTCTGATcctgatttttgt
tttttaggacTACCCTCTGATCCTGAAAGAGAAAGATACAGTAGTAGGAA
ATGGTGGTtgtaaaattgtaacaaaaattATCAACTTATTTCCAAATCAT
CAAGCATCGTAAGAAAAAAGTATGGTAAAAATGATATagagaaaaagata
aaattcaAAAGATATCCAAGGATAATAAAAAAACTGaggttgaaaatgaa
gaatctTTAAAGTCCTTACCATGTTTGACTTTAGCTTTTCTTTTACTGAC
TTGTATAATNtttcaaaagatatcaaaggataataaaaaaactgaggttg
aaaatgaagaatctTTAAAGTCCTTACCATGTTTGACTTTAGCTTTTCTT
TTACTGACTTGTATAATGGTGGCAGGATAATAGTAGTTATCATATAGTGC
CAGAATGTCTTGATTGTCATGAAGTGATATTGTTTCCATTTCAGGAATAT
GTTCCATGTCCTTAACGGAAAGATAAGCATAATTTATTATAATAACCTTT
TAACGATTGGTAAATGACTCAGACTGCATCTTTTACTCTTTGCATTAATT
AATTTGCCTACTGTATAAAGTTGACGAAATAATCCTTATTATCCATAATA
ATTCAAAAGAGACACAAAACAAGCTGGTCAGCTAAAATAAGACTCAGCTA
TTCTTTCCTGGATAAGATGCCAGCTtggttttgtatttttaaaagtGGCT
GTACACCAGCACTttcaatttgttttcattttggcgcgtttgatagacct
tttgctaggcCGGATGTCATGTTGagtataaaaactccagcatcgAAAAA
ACATGACAACACGCCTAGCAAAAGATCTATTGTTGAGGGAGCTTTTGAAT
TGTTATGGTTAGGTACCGTGaggtcaggtaacttgcatcagtggagggta
acatgcataaccctcaaatgaatgacctggctggccATTAAAATgtatca
tttgttttgaaattttgctgcttcgattggtcagtcatttgagggctatg
catgttagcctccactgatgcaagttacgcGATCTTACGGTACTGCATAT
TCAGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043896-exon-sc0004707-1491911889:3735..3991 | TCONS_00043896-exon-sc0004707-1491911889:3735..3991 | Clytia hemisphaerica | exon |
| TCONS_00043896-exon-sc0004707-1510915933:3735..3991 | TCONS_00043896-exon-sc0004707-1510915933:3735..3991 | Clytia hemisphaerica | exon |
| TCONS_00043896-exon-sc0004707-1575043694:3735..3991 | TCONS_00043896-exon-sc0004707-1575043694:3735..3991 | Clytia hemisphaerica | exon |
| TCONS_00043896-exon-sc0004707-1491911889:4542..5592 | TCONS_00043896-exon-sc0004707-1491911889:4542..5592 | Clytia hemisphaerica | exon |
| TCONS_00043896-exon-sc0004707-1510915933:4542..5592 | TCONS_00043896-exon-sc0004707-1510915933:4542..5592 | Clytia hemisphaerica | exon |
| TCONS_00043896-exon-sc0004707-1575043694:4542..5592 | TCONS_00043896-exon-sc0004707-1575043694:4542..5592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004707 | supercontig | sc0004707:3735..5592 + |
Blast
The following BLAST results are available for this feature:
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