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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043878 ID=TCONS_00043878|Name=TCONS_00043878|organism=Clytia hemisphaerica|type=transcript|length=1667bp
TCGTTGCATTCAACAAAAATGGCGAACTAGTAAGCCCAAAAACAACTCTT
CGAAACCGAAAAATCTCAACTTCATTATCCGAAGAATGCCACAAGAACCG
TAGAAAATCTCTATGCTCAGGATGAATACCAACGTTCAGAAAAGCCTGTT
TGATATCCGCTGTAATCGCAATTCTATTGNTATGCTCAGGATGAATACCA
ACATTCAGAAAAGCCTGTTTGATATCCGCTGTAATCGCAATTCTATTTAA
CCTGAATCTCAACAGAATATCGAAGATCTTTGCAAGCATGTTAGGACCAG
GATACAAACACTCATTCAGGGAGGGCCCGTTAACCCCACACGACGCGTCG
AACACAATTCTAATCTTGGTTGTCTCTCTATTCTCTTTCACGACTGCCCT
ATGTGGAAGATAATGAACCTTGCCTCTGTCCTTTGCAATCTCCTCCTCTG
GAACCTTTTCTACGATGGAATCCTTCTCATAATCCTTGATAATCTGGTCA
TAATCGTTCAAAATCCCACTCGCCTTTAGTCTTTTTCTCACATTCTCAAG
TCTCCNCCTCTGGAACCTTTTCTATTATGGAATCCTTCTCATAATCCTTG
ATAATCTGGTCATAATCGTTCAAAATCCCACTCGCCTTTAGTCTCTTTCT
CACATTCTCAAGTCACTGAAATTGTCTGGTAACTCGTCGTGGTTTGGCTT
GAAAGGAAGCTTACTTACATACCGTTTACCGTCGTGATAAATCTCCTTTT
CAAATTTGCTGACGACATCAATCTCTTCACAACCGTCCTCGCCTACCTCA
CCAACCTTGTCCACTTCCCAAAACTTCTTCAAATCTTCTTTCAAAGTGTC
TCTATCACAATCTTCCGTCAAACAACGCAACAGGTGAGTTTCCACCAAAG
AACAATTTTGGATCGTTCCAAACTTGTTCCCCAATGGACCACTCAACACC
CAACCAAGACAAGACTCACTGGCCACTGGACCACTGCAACCCTTCTTATA
CTTACCGGTGAAAAACTCATGATAAAAATCTGAACCGATCAAGATTTCAA
CCTCCGCATGACCTTCATTCGAATCCGCTAACGTCAAACCATCGAGATGC
TCAAAATTCCGACCTGCATAATCAACATCCTGCCTTGCGATGGGACTGCA
AACAATGGGTACACAGAGAGCTTCGCAATCTATATATCCCTTTCCAACCT
TACGTTTCACTTTAAACCGAACCACTTTCAACTTCTTAACCTTTGCCTCT
TCACTTCCAAATGTCTTGATCATAACTCTCTCCGTTCGAACCGTCTTCAA
CTTCAATCTTTGAACCACATCCTCTGAGGCATAAGTCCTTTGACTACCCG
TATCAAACAAAAGCCTTGTATCGGTAGAGGTGATCTCACCACAAACTGAA
GCCTTGGCTGTTTGTAACAAAATACCTCCCTTTGTTTGAATATGGGAGCC
AACAGTTTCTTCTACCTCAGGATCctccttttctttttccttttgttCAT
CTTTCTTGCCAGGATTTGCAAAACACAAACTAACATGGTGTCTTCCTTTA
CATTTCCTACATGCATAGCTTGAGCTGCATTCCTTAGCGAGATGATCTGA
ACCTAGACAAATGAAACACCGACCTTTCCTAATTACAATACCTTTCCGCG
CTCTTGGATTTGTAATN Run BLAST on NCBI protein sequence of TCONS_00043878-protein >TCONS_00043878-protein ID=TCONS_00043878-protein|Name=TCONS_00043878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
ITNPRARKGIVIRKGRCFICLGSDHLAKECSSSYACRKCKGRHHVSLCFA
NPGKKDEQKEKEKEDPEVEETVGSHIQTKGGILLQTAKASVCGEITSTDT
RLLFDTGSQRTYASEDVVQRLKLKTVRTERVMIKTFGSEEAKVKKLKVVR
FKVKRKVGKGYIDCEALCVPIVCSPIARQDVDYAGRNFEHLDGLTLADSN
EGHAEVEILIGSDFYHEFFTGKYKKGCSGPVASESCLGWVLSGPLGNKFG
TIQNCSLVETHLLRCLTEDCDRDTLKEDLKKFWEVDKVGEVGEDGCEEID
VVSKFEKEIYHDGKRYVSKLPFKPNHDELPDNFSDLRM Run BLAST on NCBI transcript from alignment at sc0004693:4227..5893 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043878 ID=TCONS_00043878|Name=TCONS_00043878|organism=Clytia hemisphaerica|type=transcript|length=1667bp|location=Sequence derived from alignment at sc0004693:4227..5893 (Clytia hemisphaerica)
NATTACAAATCCAAGAGCGCGGAAAGGTATTGTAATTAGGAAAGGTCGGT
GTTTCATTTGTCTAGGTTCAGATCATCTCGCTAAGGAATGCAGCTCAAGC
TATGCATGTAGGAAATGTAAAGGAAGACACCATGTTAGTTTGTGTTTTGC
AAATCCTGGCAAGAAAGATGaacaaaaggaaaaagaaaaggagGATCCTG
AGGTAGAAGAAACTGTTGGCTCCCATATTCAAACAAAGGGAGGTATTTTG
TTACAAACAGCCAAGGCTTCAGTTTGTGGTGAGATCACCTCTACCGATAC
AAGGCTTTTGTTTGATACGGGTAGTCAAAGGACTTATGCCTCAGAGGATG
TGGTTCAAAGATTGAAGTTGAAGACGGTTCGAACGGAGAGAGTTATGATC
AAGACATTTGGAAGTGAAGAGGCAAAGGTTAAGAAGTTGAAAGTGGTTCG
GTTTAAAGTGAAACGTAAGGTTGGAAAGGGATATATAGATTGCGAAGCTC
TCTGTGTACCCATTGTTTGCAGTCCCATCGCAAGGCAGGATGTTGATTAT
GCAGGTCGGAATTTTGAGCATCTCGATGGTTTGACGTTAGCGGATTCGAA
TGAAGGTCATGCGGAGGTTGAAATCTTGATCGGTTCAGATTTTTATCATG
AGTTTTTCACCGGTAAGTATAAGAAGGGTTGCAGTGGTCCAGTGGCCAGT
GAGTCTTGTCTTGGTTGGGTGTTGAGTGGTCCATTGGGGAACAAGTTTGG
AACGATCCAAAATTGTTCTTTGGTGGAAACTCACCTGTTGCGTTGTTTGA
CGGAAGATTGTGATAGAGACACTTTGAAAGAAGATTTGAAGAAGTTTTGG
GAAGTGGACAAGGTTGGTGAGGTAGGCGAGGACGGTTGTGAAGAGATTGA
TGTCGTCAGCAAATTTGAAAAGGAGATTTATCACGACGGTAAACGGTATG
TAAGTAAGCTTCCTTTCAAGCCAAACCACGACGAGTTACCAGACAATTTC
AGTGACTTGAGAATGTGAGAAAGAGACTAAAGGCGAGTGGGATTTTGAAC
GATTATGACCAGATTATCAAGGATTATGAGAAGGATTCCATAATAGAAAA
GGTTCCAGAGGNGGAGACTTGAGAATGTGAGAAAAAGACTAAAGGCGAGT
GGGATTTTGAACGATTATGACCAGATTATCAAGGATTATGAGAAGGATTC
CATCGTAGAAAAGGTTCCAGAGGAGGAGATTGCAAAGGACAGAGGCAAGG
TTCATTATCTTCCACATAGGGCAGTCGTGAAAGAGAATAGAGAGACAACC
AAGATTAGAATTGTGTTCGACGCGTCGTGTGGGGTTAACGGGCCCTCCCT
GAATGAGTGTTTGTATCCTGGTCCTAACATGCTTGCAAAGATCTTCGATA
TTCTGTTGAGATTCAGGTTAAATAGAATTGCGATTACAGCGGATATCAAA
CAGGCTTTTCTGAATGTTGGTATTCATCCTGAGCATANCAATAGAATTGC
GATTACAGCGGATATCAAACAGGCTTTTCTGAACGTTGGTATTCATCCTG
AGCATAGAGATTTTCTACGGTTCTTGTGGCATTCTTCGGATAATGAAGTT
GAGATTTTTCGGTTTCGAAGAGTTGTTTTTGGGCTTACTAGTTCGCCATT
TTTGTTGAATGCAACGA Coding sequence (CDS) from alignment at sc0004693:4227..5893 >TCONS_00043878 ID=TCONS_00043878|Name=TCONS_00043878|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0004693:4227..5893 (Clytia hemisphaerica)
ATTACAAATCCAAGAGCGCGGAAAGGTATTGTAATTAGGAAAGGTCGGTG
TTTCATTTGTCTAGGTTCAGATCATCTCGCTAAGGAATGCAGCTCAAGCT
ATGCATGTAGGAAATGTAAAGGAAGACACCATGTTAGTTTGTGTTTTGCA
AATCCTGGCAAGAAAGATGaacaaaaggaaaaagaaaaggagGATCCTGA
GGTAGAAGAAACTGTTGGCTCCCATATTCAAACAAAGGGAGGTATTTTGT
TACAAACAGCCAAGGCTTCAGTTTGTGGTGAGATCACCTCTACCGATACA
AGGCTTTTGTTTGATACGGGTAGTCAAAGGACTTATGCCTCAGAGGATGT
GGTTCAAAGATTGAAGTTGAAGACGGTTCGAACGGAGAGAGTTATGATCA
AGACATTTGGAAGTGAAGAGGCAAAGGTTAAGAAGTTGAAAGTGGTTCGG
TTTAAAGTGAAACGTAAGGTTGGAAAGGGATATATAGATTGCGAAGCTCT
CTGTGTACCCATTGTTTGCAGTCCCATCGCAAGGCAGGATGTTGATTATG
CAGGTCGGAATTTTGAGCATCTCGATGGTTTGACGTTAGCGGATTCGAAT
GAAGGTCATGCGGAGGTTGAAATCTTGATCGGTTCAGATTTTTATCATGA
GTTTTTCACCGGTAAGTATAAGAAGGGTTGCAGTGGTCCAGTGGCCAGTG
AGTCTTGTCTTGGTTGGGTGTTGAGTGGTCCATTGGGGAACAAGTTTGGA
ACGATCCAAAATTGTTCTTTGGTGGAAACTCACCTGTTGCGTTGTTTGAC
GGAAGATTGTGATAGAGACACTTTGAAAGAAGATTTGAAGAAGTTTTGGG
AAGTGGACAAGGTTGGTGAGGTAGGCGAGGACGGTTGTGAAGAGATTGAT
GTCGTCAGCAAATTTGAAAAGGAGATTTATCACGACGGTAAACGGTATGT
AAGTAAGCTTCCTTTCAAGCCAAACCACGACGAGTTACCAGACAATTTCA
GTGACTTGAGAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043878-exon-sc0004693-1491911889:4227..5893 | TCONS_00043878-exon-sc0004693-1491911889:4227..5893 | Clytia hemisphaerica | exon |
| TCONS_00043878-exon-sc0004693-1510915933:4227..5893 | TCONS_00043878-exon-sc0004693-1510915933:4227..5893 | Clytia hemisphaerica | exon |
| TCONS_00043878-exon-sc0004693-1575043694:4227..5893 | TCONS_00043878-exon-sc0004693-1575043694:4227..5893 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004693 | supercontig | sc0004693:4227..5893 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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