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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043870 ID=TCONS_00043870|Name=TCONS_00043870|organism=Clytia hemisphaerica|type=transcript|length=1171bp
ATTATATATATACTTTCAAACTCGTTGGTTGTGAAAACCCAAAGATTTCA
CCTTCCTCTCAATTTTGTTCTCATAACTATAGCTATAGGCCGGCCAACAT
CAAACGAAAAACAAGCAGATACAAATTTAAGGTAGAATATGGAAACAATT
AGATATCATAAAAATGGATACACAGATATTAACACAGATAACACTAACGT
ATTTATACTAGATCTTTATTGTATTTACTATTCATTGATATTAAATTCTA
CCTATCTTATCAATAAGTGTTTTAAACAGGTCAATTCCTTCACCAGCAGT
ATTAGGAATGTTCAATGAATATTCTTGGATAATAATATGGGCTAATTCAA
AAAACTCACTAGAGCAAATATAATCAGTAACAATTGTTTTACAGCATAGG
TCTTTTACAACATTAAAGTCAAACAAATCTAATGGGAACTTGTAGTCACG
AATGGACGCATCAGAGAGTTGAGGTGTGAAGTAAAGAACGTTTGGTCTTC
CAGCAGGTCTTACTTTTCTATCAGAATTCATTGCTCGTCTTATGCGATGG
TTATTCCAACTTAACATTGTATTATCCAAGTCTCTTTTAAGCATTtggta
aaaacaaaatttgatgcATTCACAATGAATTATGTTTGATGTATCGAAAA
TGTCATCATCTATCAATGATCTAAAGAAATTTATCCACCAATTTGTACAT
GTTCTTCTCAACATTGACCACCATGCTTCAATTCTTTGGTTGGTGACTGA
TCTACCATATTTGAAACTTCTCTCCCCTGCACTTTGATCATTATCAGCTC
TTCTAAGAAATCGTTGTGATGCGGCTATGATGACGTTTTCGGTGCCTCTC
TCTCCCACTACCTTTCTTGGAACACCAGAAATAGTTCTGACGGTCTCCAA
GTAAAAGTTGCTAACTACAGCAGGGTCCTTGTTTGATGCAGCAACTTTGA
GCCAGAGAATACGCCTACTGAATCCATCAATAGCACCATGTATGCTGAAA
CCAAAAGGTTTCAATTTATCATACCCGTCCAAATGCCACACGTAGTTGGG
TCCTTTTGACCAATACTGTctccttttcaaaacatttcgaGATCTCCTCT
CAACACCCTCCGGATCAAGTTCTTTTAAGATAATAGCAACATTTCTTCTT
GTAACATTGAGTCCATTCTGA Run BLAST on NCBI protein sequence of TCONS_00043870-protein >TCONS_00043870-protein ID=TCONS_00043870-protein|Name=TCONS_00043870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
QNGLNVTRRNVAIILKELDPEGVERRSRNVLKRRQYWSKGPNYVWHLDGY
DKLKPFGFSIHGAIDGFSRRILWLKVAASNKDPAVVSNFYLETVRTISGV
PRKVVGERGTENVIIAASQRFLRRADNDQSAGERSFKYGRSVTNQRIEAW
WSMLRRTCTNWWINFFRSLIDDDIFDTSNIIHCECIKFCFYQMLKRDLDN
TMLSWNNHRIRRAMNSDRKVRPAGRPNVLYFTPQLSDASIRDYKFPLDLF
DFNVVKDLCCKTIVTDYICSSEFFELAHIIIQEYSLNIPNTAGEGIDLFK
TLIDKIGRI Run BLAST on NCBI transcript from alignment at sc0004686:1..1171 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043870 ID=TCONS_00043870|Name=TCONS_00043870|organism=Clytia hemisphaerica|type=transcript|length=1171bp|location=Sequence derived from alignment at sc0004686:1..1171 (Clytia hemisphaerica)
TCAGAATGGACTCAATGTTACAAGAAGAAATGTTGCTATTATCTTAAAAG
AACTTGATCCGGAGGGTGTTGAGAGGAGATCtcgaaatgttttgaaaagg
agACAGTATTGGTCAAAAGGACCCAACTACGTGTGGCATTTGGACGGGTA
TGATAAATTGAAACCTTTTGGTTTCAGCATACATGGTGCTATTGATGGAT
TCAGTAGGCGTATTCTCTGGCTCAAAGTTGCTGCATCAAACAAGGACCCT
GCTGTAGTTAGCAACTTTTACTTGGAGACCGTCAGAACTATTTCTGGTGT
TCCAAGAAAGGTAGTGGGAGAGAGAGGCACCGAAAACGTCATCATAGCCG
CATCACAACGATTTCTTAGAAGAGCTGATAATGATCAAAGTGCAGGGGAG
AGAAGTTTCAAATATGGTAGATCAGTCACCAACCAAAGAATTGAAGCATG
GTGGTCAATGTTGAGAAGAACATGTACAAATTGGTGGATAAATTTCTTTA
GATCATTGATAGATGATGACATTTTCGATACATCAAACATAATTCATTGT
GAATgcatcaaattttgtttttaccaAATGCTTAAAAGAGACTTGGATAA
TACAATGTTAAGTTGGAATAACCATCGCATAAGACGAGCAATGAATTCTG
ATAGAAAAGTAAGACCTGCTGGAAGACCAAACGTTCTTTACTTCACACCT
CAACTCTCTGATGCGTCCATTCGTGACTACAAGTTCCCATTAGATTTGTT
TGACTTTAATGTTGTAAAAGACCTATGCTGTAAAACAATTGTTACTGATT
ATATTTGCTCTAGTGAGTTTTTTGAATTAGCCCATATTATTATCCAAGAA
TATTCATTGAACATTCCTAATACTGCTGGTGAAGGAATTGACCTGTTTAA
AACACTTATTGATAAGATAGGTAGAATTTAATATCAATGAATAGTAAATA
CAATAAAGATCTAGTATAAATACGTTAGTGTTATCTGTGTTAATATCTGT
GTATCCATTTTTATGATATCTAATTGTTTCCATATTCTACCTTAAATTTG
TATCTGCTTGTTTTTCGTTTGATGTTGGCCGGCCTATAGCTATAGTTATG
AGAACAAAATTGAGAGGAAGGTGAAATCTTTGGGTTTTCACAACCAACGA
GTTTGAAAGTATATATATAAT Coding sequence (CDS) from alignment at sc0004686:1..1171 >TCONS_00043870 ID=TCONS_00043870|Name=TCONS_00043870|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0004686:1..1171 (Clytia hemisphaerica)
CAGAATGGACTCAATGTTACAAGAAGAAATGTTGCTATTATCTTAAAAGA
ACTTGATCCGGAGGGTGTTGAGAGGAGATCtcgaaatgttttgaaaagga
gACAGTATTGGTCAAAAGGACCCAACTACGTGTGGCATTTGGACGGGTAT
GATAAATTGAAACCTTTTGGTTTCAGCATACATGGTGCTATTGATGGATT
CAGTAGGCGTATTCTCTGGCTCAAAGTTGCTGCATCAAACAAGGACCCTG
CTGTAGTTAGCAACTTTTACTTGGAGACCGTCAGAACTATTTCTGGTGTT
CCAAGAAAGGTAGTGGGAGAGAGAGGCACCGAAAACGTCATCATAGCCGC
ATCACAACGATTTCTTAGAAGAGCTGATAATGATCAAAGTGCAGGGGAGA
GAAGTTTCAAATATGGTAGATCAGTCACCAACCAAAGAATTGAAGCATGG
TGGTCAATGTTGAGAAGAACATGTACAAATTGGTGGATAAATTTCTTTAG
ATCATTGATAGATGATGACATTTTCGATACATCAAACATAATTCATTGTG
AATgcatcaaattttgtttttaccaAATGCTTAAAAGAGACTTGGATAAT
ACAATGTTAAGTTGGAATAACCATCGCATAAGACGAGCAATGAATTCTGA
TAGAAAAGTAAGACCTGCTGGAAGACCAAACGTTCTTTACTTCACACCTC
AACTCTCTGATGCGTCCATTCGTGACTACAAGTTCCCATTAGATTTGTTT
GACTTTAATGTTGTAAAAGACCTATGCTGTAAAACAATTGTTACTGATTA
TATTTGCTCTAGTGAGTTTTTTGAATTAGCCCATATTATTATCCAAGAAT
ATTCATTGAACATTCCTAATACTGCTGGTGAAGGAATTGACCTGTTTAAA
ACACTTATTGATAAGATAGGTAGAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043870-exon-sc0004686-1491911889:1..1171 | TCONS_00043870-exon-sc0004686-1491911889:1..1171 | Clytia hemisphaerica | exon |
| TCONS_00043870-exon-sc0004686-1510915933:1..1171 | TCONS_00043870-exon-sc0004686-1510915933:1..1171 | Clytia hemisphaerica | exon |
| TCONS_00043870-exon-sc0004686-1575043694:1..1171 | TCONS_00043870-exon-sc0004686-1575043694:1..1171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004686 | supercontig | sc0004686:1..1171 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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