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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043867 ID=TCONS_00043867|Name=TCONS_00043867|organism=Clytia hemisphaerica|type=transcript|length=394bp
ctttttttcttcaccgacAGCAAAATTCACATTCAAACTTCTTTGCGATC
CTGAAGAATTTCTATGCAAAGTACAAACGAACGCAGGACTGAAGGAATTA
GTATTGGCAAACAATGCAAATCTTTTGAAGCACATGTCTAGCATTCATAC
TGAActcTTTCCTAAAATCAAGATCGACTACGACTTCATCGAGGTGAAGA
ACAATACATATCTAAAACTTTCAAGTCGAGCATACGTCAGTTGCCCCTTT
ACCGATGACGAGTTTGGCGTCATAAGTCCACGCAGCTTTCACGATTTTGA
TCCCTATCGGACGAATTGCCACGGAGGTTTCATGGCTTCAGCAATCGAGC
ATTGGTTTCCAAGGTTAGAAGACCAAGTCAAATTGGCACACAGA Run BLAST on NCBI protein sequence of TCONS_00043867-protein >TCONS_00043867-protein ID=TCONS_00043867-protein|Name=TCONS_00043867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
FFSSPTAKFTFKLLCDPEEFLCKVQTNAGLKELVLANNANLLKHMSSIHT
ELFPKIKIDYDFIEVKNNTYLKLSSRAYVSCPFTDDEFGVISPRSFHDFD
PYRTNCHGGFMASAIEHWFPRLEDQVKLAHR Run BLAST on NCBI transcript from alignment at sc0004684:369..2620- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043867 ID=TCONS_00043867|Name=TCONS_00043867|organism=Clytia hemisphaerica|type=transcript|length=2252bp|location=Sequence derived from alignment at sc0004684:369..2620- (Clytia hemisphaerica)
CTTTTTTTCTTCACCGACAGCAAAATTCACATTCAAACTTCTTTGCGATC
CTGAAGAATTTCTATGCAAAGTACAAACGAACGCAGGACTGAAGGAATTA
GTATTGGCAAACAATGCAAATCTTTTGAAGCACATGTCTAGCATTCATAC
TGAAGTAAGTACTTTAATTTTGATAAAATGGTTAGTCTACTAAAAATTTA
AGGCTTAAGAGTTTTTCTTTCATTTTTAAGTTTATAAATTGGAAAGTTCA
ACTGTGGTAGTCCATTTTATAGACCGTTAGACCGCCAGTAGGCCGTCTCA
TTTATGAGCATTTGTACTGGCAGACCGTAGGCCGTCAATTTTAGACTTTC
AAATGGTGTTCTTTTGGTTATTTTCATCTATGACTGTTTTTAGAATTCTT
TGAAAAGTAGCTCAACTGTTAGTAGTCCATTTCATAGACCGTTAGCCCGC
CAGTAGGCCGTCTCATTTATGAGCATTTGTACTGGTAGACCGTAGGCCGT
CAATTTTAGACTTTCAAAAGGGGTTCTTTTGGTTATTTTCATCTATGACT
GTTTTTAGAATTCTTTGAGAAGTAGCTCAACTGTTAGTAGTCCATTTCAT
AGCCCGTTAGCCCGCCAGTAGGCCGTCTCATTTATGAGCATTTGTACTGG
TAGACCGTAGGCCGTCAATTTTAGACTTTCAAAAGGGGTTCTTTTGGTTA
TTTTCATCTATGACTGTTTTTAGAATTCTTTGAGAAGTAGCTCAACTGTT
AGTAGTCCATTTCATAGCCCGTTAGCCCGCCAGTAGGCCGTCTCATTTAT
GAGCATTTGTACTGGTAGACCGTAGGCCGTCAATTTTAGACTTTCAAAAG
GGGTTCTTTTGGTTATTTTCATCTATGACTGTTTTTAGAATTCTTTGAGA
AGTAGCTCAACTGTTAGTAGTCCATTTCATAGCCCGTTAGCCCGCCAGTA
GGCCGTCTCATTTATGAGCATTTGTACTGGTAGACCGTAGGCCGTCAATT
TTAGACTTTCAAAAGGGGTTCTTTTGGTTATTTTCATCTATGACTGTTTT
TAGAATTCTTTGAGAAGTAGCTCAACTGTTAGTAGTCCATTTCATAGCCC
GTTAGCCCGCCAGTAGGCCGTCTCATTTATGAGCATTTGTACTGGTAGAC
CGTAGGCCGTCAATTTTAGACTTTCAAAAGGGGTTCTTTTGGTTATTTTC
ATCTATGACTGTTTTTAGAATTCTTTGAGAAGTAGCTCAACTGTTAGTAG
TCCATTTCATAGCCCGTTAGCCCGCCAGTAGGCCGTCTCATTTATGAGCA
TTTGTACTGGTAGACCGTAGGCCGTCAATTTTAGACTTTCAAAAGGGGTT
CTTTTGGTTATTTTCATCTATGACTGTTTTTAGAATTCTTTGAGAAGTAG
CTCAACTGTTAGTAGTCCATTTCATAGCCCGTTAGCCCGCCAGTAGGCCG
TCTCATTTATGAGCATTTGTACTGGCAGACCATAGGCCGTCAATTTTAGA
CTTAAAGGTGTTCTTTTCGTTATTTTCATCAATGACTGTTTTTAGAATTC
TTTGAAAAGTAGCTCAACTGTGGTAGTCCATTCCATAGACCGTTAGACCG
CCAGTAGGCCGTCTCATTTATGAGCATTTGTACTGGAAGACCGTAGGCCG
TCAATTTTAGACTTTCATAAGGTGTTCTTTTGGTTATTTTCATCTATGAC
TGTTTTTAGAATTCTTTGAAAAGTAGTTCAACTGTTAGTAGTCCATTTCA
TAGACCGTTAGACCGCCAGTAGGCCGTCTCATTTATGAGCATTTGTACTG
GCAGACCGTAGGCCGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAGTCCATTTCATAGACCGTTAGACCGCCAGTAGG
CCGTCTCATTTATGAGCATTTGTACTGGAAGACCGTAGGCCGTCAATTTT
AGACTTTTTATGAACTTGAGACTGATTGAAAACATACTAATTTTTCCAAT
TTTCTTTTTCAGCTCTTTCCTAAAATCAAGATCGACTACGACTTCATCGA
GGTGAAGAACAATACATATCTAAAACTTTCAAGTCGAGCATACGTCAGTT
GCCCCTTTACCGATGACGAGTTTGGCGTCATAAGTCCACGCAGCTTTCAC
GATTTTGATCCCTATCGGACGAATTGCCACGGAGGTTTCATGGCTTCAGC
AATCGAGCATTGGTTTCCAAGGTTAGAAGACCAAGTCAAATTGGCACACA
GA Coding sequence (CDS) from alignment at sc0004684:369..2620- >TCONS_00043867 ID=TCONS_00043867|Name=TCONS_00043867|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0004684:369..2620- (Clytia hemisphaerica)
CTCTTTCCTAAAATCAAGATCGACTACGACTTCATCGAGGTGAAGAACAA
TACATATCTAAAACTTTCAAGTCGAGCATACGTCAGTTGCCCCTTTACCG
ATGACGAGTTTGGCGTCATAAGTCCACGCAGCTTTCACGATTTTGATCCC
TATCGGACGAATTGCCACGGAGGTTTCATGGCTTCAGCAATCGAGCATTG
GTTTCCAAGGTTAGAAGACCAAGTCAAATTGGCACACAGATTTTTTTCTT
CACCGACAGCAAAATTCACATTCAAACTTCTTTGCGATCCTGAAGAATTT
CTATGCAAAGTACAAACGAACGCAGGACTGAAGGAATTAGTATTGGCAAA
CAATGCAAATCTTTTGAAGCACATGTCTAGCATTCATACTGAACTCTTTC
CTAAAATCAAGATCGACTACGACTTCATCGAGGTGAAGAACAATACATAT
CTAAAACTTTCAAGTCGAGCATACGTCAGTTGCCCCTTTACCGATGACGA
GTTTGGCGTCATAAGTCCACGCAGCTTTCACGATTTTGATCCCTATCGGA
CGAATTGCCACGGAGGTTTCATGGCTTCAGCAATCGAGCATTGGTTTCCA
AGGTTAGAAGACCAAGTCAAATTGGCACACAGATTTTTTTCTTCACCGAC
AGCAAAATTCACATTCAAACTTCTTTGCGATCCTGAAGAATTTCTATGCA
AAGTACAAACGAACGCAGGACTGAAGGAATTAGTATTGGCAAACAATGCA
AATCTTTTGAAGCACATGTCTAGCATTCATACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043867-exon-sc0004684-1575043694:2467..2620 | TCONS_00043867-exon-sc0004684-1575043694:2467..2620 | Clytia hemisphaerica | exon |
| TCONS_00043867-exon-sc0004684-1575043694:369..608 | TCONS_00043867-exon-sc0004684-1575043694:369..608 | Clytia hemisphaerica | exon |
| TCONS_00043867-exon-sc0004684-1510915933:2467..2620 | TCONS_00043867-exon-sc0004684-1510915933:2467..2620 | Clytia hemisphaerica | exon |
| TCONS_00043867-exon-sc0004684-1510915933:369..608 | TCONS_00043867-exon-sc0004684-1510915933:369..608 | Clytia hemisphaerica | exon |
| TCONS_00043867-exon-sc0004684-1491911889:2467..2620 | TCONS_00043867-exon-sc0004684-1491911889:2467..2620 | Clytia hemisphaerica | exon |
| TCONS_00043867-exon-sc0004684-1491911889:369..608 | TCONS_00043867-exon-sc0004684-1491911889:369..608 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004684 | supercontig | sc0004684:369..2620 - |
Blast
The following BLAST results are available for this feature:
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