TCONS_00043859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043859
Unique NameTCONS_00043859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043859 ID=TCONS_00043859|Name=TCONS_00043859|organism=Clytia hemisphaerica|type=transcript|length=1554bp
CATTACCCGATTAAGAAAACTCACACAAATAGAATGATCATTCTTTTATA
GTTGCACACAAGAAATCAAAGGTGAAGAGTGTATCATTAGGACTGAGAAG
GAAAGAATACCACCAAAAAAATCCTATTTTCATCTCGAGTGCCAATCAAA
CGGACTGAAAGCAGCATTTAACTTGAGTCATTTGGAACGACATGGATTAC
CTTACATTGTCAGATTTAAAGGCGAAGATCATAATTGCAAGCCATTGAAT
TCAACATATGGAAACCTTTATGGTGACGGAAAACTATGGATTGCAGCTAA
TTATTCAGATTGTGGGATCAAGGCTTATGAAGAGGGAGGGAAGATAGCAT
TTGAACAGACAATCGTGGTAGAGTACGGTGCTAAGATGGATTCTTCATTG
ATACAAAGGCAATTCTTTGATACCTATAATGCAACATGTTTAATTGAACG
AAACATTACAAGGCAATGGAATATGAGTGTTGCAAAAAGAAGGACTATCA
ATTCAGAAGAAGACGACGAAAGTAATTTTGCATTTGACTTCAAAACTTTG
AAAGCTGGTACTAAATCATGGACAGGTCTTGTTTACGTTGGCGAAAAGAT
GGACTTTGATTTGTCTTTAAATGGAGCTTCTAATTCTATCAAAACTTCGC
CCCAAGATTGCTATGCAACTCGATTGGATGGAACCGGAAGATATGATTTG
ATCAAGAATAAATGCAGTGTCGGTGGCGAAACTGGTGTCACCATCACATC
AACTCCTCAAGATACAAGTCACTTTTCTTGGGAAATGGAAGCTTTCAGGT
ATTTTGGTGATTCTGATGGCATCATCATTACGTGCCGCATTTTGATCTGC
CGAAGTCGTCCTATTGGTCAATTAACCGATGAATGTAGACGATGTGGGCA
AAGACCGTTTCCATTCCGACGCAAAAGAGATGCAGCCAATGAAGATGAGA
GTAATGTTCTAACAGATAAATCGGTGAAAAGTCTACCCATCTTCATTGCT
GTTAGGGACGCACCTGATAAGGCAACTTTGAAAGAATCTGGACGCAAATT
ATCCTCAAATGATCTTGGTGCTACGGAGACAACTGCACTGATTGTCATAG
CTGGGTTGGTCGGTTCGGTGTTGTGCGTGGCTATTGCTAAGAAGGTTTTC
TTCAATAACCCAGCAACGAAAGAGGTTCATCTACTTTCACCAAAGGAATA
AAATCCTGTAAACTTTTATTCTCCCCATGgtcttaatatttttgtaacag
cAAAATTTACCTTATCTCAGTTACCGTTATAATAAATGAACAAAATCATC
TTATTATGTAGTAACTTTGTTCGAAATATAATTGGTCTGGGGAAATAATA
CATTCTTTATTTGTAGGAAATTGATAATTTTGACTACTCGTTTCTTGTTA
TTTACATAGTTTGTCTACCGATGACATcaggaatttgaaaattttgaact
ctTAGATTTAAAATGCACCTCTTATACCTCTATACCGTTTATTTAATATT
TGAAAGATAGTTTTAAGTAGTAATAAAGTCATAattcttctttgaaaaaa
aata
Run BLAST on NCBI

protein sequence of TCONS_00043859-protein

>TCONS_00043859-protein ID=TCONS_00043859-protein|Name=TCONS_00043859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MDSSLIQRQFFDTYNATCLIERNITRQWNMSVAKRRTINSEEDDESNFAF
DFKTLKAGTKSWTGLVYVGEKMDFDLSLNGASNSIKTSPQDCYATRLDGT
GRYDLIKNKCSVGGETGVTITSTPQDTSHFSWEMEAFRYFGDSDGIIITC
RILICRSRPIGQLTDECRRCGQRPFPFRRKRDAANEDESNVLTDKSVKSL
PIFIAVRDAPDKATLKESGRKLSSNDLGATETTALIVIAGLVGSVLCVAI
AKKVFFNNPATKEVHLLSPKE
Run BLAST on NCBI

transcript from alignment at sc0004671:1936..4742-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043859 ID=TCONS_00043859|Name=TCONS_00043859|organism=Clytia hemisphaerica|type=transcript|length=2807bp|location=Sequence derived from alignment at sc0004671:1936..4742- (Clytia hemisphaerica)
CATTACCCGATTAAGAAAACTCACACAAATAGAATGATCATTCTTTTATA
GTTGCACACAAGAAATCAAAGGTGAAGAGTGTATCATTAGGACTGAGAAG
GAAAGAATACCACCAAAAAGTGAGTGAATTATACATTTTGAACTGTAAAC
TCATAAGTATTTTAATAAAGAACAGTTACCTCTGAATTTTCTGAGATGAC
TAGCAATAAAATTTAATTTTTTCTTGTATTTTGATCCTAAATTACTTTTT
AAATCCTAGAATCCTATTTTCATCTCGAGTGCCAATCAAACGGACTGAAA
GCAGCATTTAACTTGAGTCATTTGGAACGACATGGATTACCTTACATTGT
CAGATTTAAAGGCGAAGATCATAATTGCAAGCCATTGAATTCAACATATG
GAAACCTTTATGGTGACGGAAAACTATGGATTGCAGCTAATTATTCAGAT
TGTGGGATCAAGGCTTATGAAGAGGGAGGGAAGATAGCATTTGAACAGAC
AATCGTGGTAGAGTACGGTGCTAAGATGGATTCTTCATTGATACAAAGGC
AATTCTTTGATACCTATAATGCAACATGTTTAATTGAACGAAACATTACA
AGGCAATGGAATATGAGTGTTGCAAAAAGAAGGACTATCAATTCAGAAGA
AGGTTAGTCACAAGAACAATTTTGAAAAAATCCTAACCCGGAATTGCTGA
ATTTCAAGCAACGAGGTTAAAGGCCGTAAAGGTTTTACAAATTTTAAATA
AAGCCTAAATAACTCAAATTTATCCCCAAAATGGGAACAAAATTCAAGAA
CAGCTTCGGGCTCAAAGTATTGCTTTAATGTAATATCATGAACGGCTGAG
GCTCAACAAAAAAATCTCTGGTTCTTAAAAAACAGAGAATGTCTATTGAA
AAAAGAGGATTAATTACTTAAAGACGTCTATATTCAAACGTCTGAGACGT
CTACATTTGAACGTTTGAGGATTTAAAACAATTTAAAGATGGTTTTAAAG
ATTCATTTCATTAGTCCGTTAAGTATATCATTAAAAGGGTTTTATACTAT
TCTTTCTATTTAATAATCGCCTCCAAACTCTTCAATTTTAGACGACGAAA
GTAATTTTGCATTTGACTTCAAAACTTTGAAAGCTGGTACTAAATCATGG
ACAGGTCTTGTTTACGTTGGCGAAAAGATGGACTTTGATTTGTCTTTAAA
TGGAGCTTCTAATTCTATCAAAACTTCGCCCCAAGATTGCTATGCAACTC
GATTGGATGGAACCGGAAGATATGATTTGATCAAGAATAAGTAAATATTC
AACAAACTTTAATTCTAAAGCTCCAGTTAGCGTTCTCCTGCAACTCTAAT
ACAATGCTAGCTGGTTGATAAGGGATCGATTGAGAAATACTTTTGCTGGA
GTCAAGTAATACCGAGCGCAAATACATAAACTCGCTAATGACTGAGGTTG
TAAGGTTACTGCGATTACCAAGGACAACGTTCTTAGTAAAGCCCCAGTAG
AGTTTGCTAGTATTATATCTGAGTCTTCCGGTGGTGTATAAGGTGGAAAG
AGTTATTTCTGTGTTGGTTTAGTTTTCCAAGAAATTGAAGTCCATAAATG
AAAACTCCGTGCTGTGAAGGTCATCATACCAAAAGAACCATATCAATTGC
GTTTAAATGTGTACACACCTCTAAGTGAATTAGTCTAAAAATACTGCAAT
GGATTTCAAGTGAAGCCATTTCTCGAGATGATAATACATATTTTAATAAC
TTTTTTAGATGCAGTGTCGGTGGCGAAACTGGTGTCACCATCACATCAAC
TCCTCAAGATACAAGTCACTTTTCTTGGGAAATGGAAGCTTTCAGGTATT
TTGGTGATTCTGATGGCATCATCATTACGTGCCGCATTTTGATCTGCCGA
AGTCGTCCTATTGGTCAATTAACCGATGAATGTAGACGATGTGGGCAAAG
ACCGTTTCCATTCCGACGCAAAAGAGATGCAGCCAATGAAGATGAGAGTA
ATGTTCTAACAGATAAATCGGTGAAAAGTCTACCCATCTTCATTGCTGTT
AGGGACGGTAAGTTGTATTTATCAATTTTGCAAAAATTGGGCTTTTCCAG
AAATAGTCCGTGTCCCCCCTGTGGGGTAAAATCTTTTTCTGGAAAAGCCT
ATTGTAGACTAAGCAAAATTATGTTTTTCAAGAGACTTACAATGAAGTGT
AAATTTTCAGGTTTTCAAATAAACGAAATTCAAGAGTAAAGCAACATAAT
CTTTTAATTTTAGCACCTGATAAGGCAACTTTGAAAGAATCTGGACGCAA
ATTATCCTCAAATGATCTTGGTGCTACGGAGACAACTGCACTGATTGTCA
TAGCTGGGTTGGTCGGTTCGGTGTTGTGCGTGGCTATTGCTAAGAAGGTT
TTCTTCAATAACCCAGCAACGAAAGAGGTTCATCTACTTTCACCAAAGGA
ATAAAATCCTGTAAACTTTTATTCTCCCCATGGTCTTAATATTTTTGTAA
CAGCAAAATTTACCTTATCTCAGTTACCGTTATAATAAATGAACAAAATC
ATCTTATTATGTAGTAACTTTGTTCGAAATATAATTGGTCTGGGGAAATA
ATACATTCTTTATTTGTAGGAAATTGATAATTTTGACTACTCGTTTCTTG
TTATTTACATAGTTTGTCTACCGATGACATCAGGAATTTGAAAATTTTGA
ACTCTTAGATTTAAAATGCACCTCTTATACCTCTATACCGTTTATTTAAT
ATTTGAAAGATAGTTTTAAGTAGTAATAAAGTCATAATTCTTCTTTGAAA
AAAAATA

Coding sequence (CDS) from alignment at sc0004671:1936..4742-

>TCONS_00043859 ID=TCONS_00043859|Name=TCONS_00043859|organism=Clytia hemisphaerica|type=CDS|length=3264bp|location=Sequence derived from alignment at sc0004671:1936..4742- (Clytia hemisphaerica)
CACCTGATAAGGCAACTTTGAAAGAATCTGGACGCAAATTATCCTCAAAT
GATCTTGGTGCTACGGAGACAACTGCACTGATTGTCATAGCTGGGTTGGT
CGGTTCGGTGTTGTGCGTGGCTATTGCTAAGAAGGTTTTCTTCAATAACC
CAGCAACGAAAGAGGTTCATCTACTTTCACCAAAGGAATAAATGCAGTGT
CGGTGGCGAAACTGGTGTCACCATCACATCAACTCCTCAAGATACAAGTC
ACTTTTCTTGGGAAATGGAAGCTTTCAGGTATTTTGGTGATTCTGATGGC
ATCATCATTACGTGCCGCATTTTGATCTGCCGAAGTCGTCCTATTGGTCA
ATTAACCGATGAATGTAGACGATGTGGGCAAAGACCGTTTCCATTCCGAC
GCAAAAGAGATGCAGCCAATGAAGATGAGAGTAATGTTCTAACAGATAAA
TCGGTGAAAAGTCTACCCATCTTCATTGCTGTTAGGGACGACGACGAAAG
TAATTTTGCATTTGACTTCAAAACTTTGAAAGCTGGTACTAAATCATGGA
CAGGTCTTGTTTACGTTGGCGAAAAGATGGACTTTGATTTGTCTTTAAAT
GGAGCTTCTAATTCTATCAAAACTTCGCCCCAAGATTGCTATGCAACTCG
ATTGGATGGAACCGGAAGATATGATTTGATCAAGAATAAATGGATTCTTC
ATTGATACAAAGGCAATTCTTTGATACCTATAATGCAACATGTTTAATTG
AACGAAACATTACAAGGCAATGGAATATGAGTGTTGCAAAAAGAAGGACT
ATCAATTCAGAAGAAGCACCTGATAAGGCAACTTTGAAAGAATCTGGACG
CAAATTATCCTCAAATGATCTTGGTGCTACGGAGACAACTGCACTGATTG
TCATAGCTGGGTTGGTCGGTTCGGTGTTGTGCGTGGCTATTGCTAAGAAG
GTTTTCTTCAATAACCCAGCAACGAAAGAGGTTCATCTACTTTCACCAAA
GGAATAAATGCAGTGTCGGTGGCGAAACTGGTGTCACCATCACATCAACT
CCTCAAGATACAAGTCACTTTTCTTGGGAAATGGAAGCTTTCAGGTATTT
TGGTGATTCTGATGGCATCATCATTACGTGCCGCATTTTGATCTGCCGAA
GTCGTCCTATTGGTCAATTAACCGATGAATGTAGACGATGTGGGCAAAGA
CCGTTTCCATTCCGACGCAAAAGAGATGCAGCCAATGAAGATGAGAGTAA
TGTTCTAACAGATAAATCGGTGAAAAGTCTACCCATCTTCATTGCTGTTA
GGGACGACGACGAAAGTAATTTTGCATTTGACTTCAAAACTTTGAAAGCT
GGTACTAAATCATGGACAGGTCTTGTTTACGTTGGCGAAAAGATGGACTT
TGATTTGTCTTTAAATGGAGCTTCTAATTCTATCAAAACTTCGCCCCAAG
ATTGCTATGCAACTCGATTGGATGGAACCGGAAGATATGATTTGATCAAG
AATAAATGGATTCTTCATTGATACAAAGGCAATTCTTTGATACCTATAAT
GCAACATGTTTAATTGAACGAAACATTACAAGGCAATGGAATATGAGTGT
TGCAAAAAGAAGGACTATCAATTCAGAAGAAGCACCTGATAAGGCAACTT
TGAAAGAATCTGGACGCAAATTATCCTCAAATGATCTTGGTGCTACGGAG
ACAACTGCACTGATTGTCATAGCTGGGTTGGTCGGTTCGGTGTTGTGCGT
GGCTATTGCTAAGAAGGTTTTCTTCAATAACCCAGCAACGAAAGAGGTTC
ATCTACTTTCACCAAAGGAATAAATGCAGTGTCGGTGGCGAAACTGGTGT
CACCATCACATCAACTCCTCAAGATACAAGTCACTTTTCTTGGGAAATGG
AAGCTTTCAGGTATTTTGGTGATTCTGATGGCATCATCATTACGTGCCGC
ATTTTGATCTGCCGAAGTCGTCCTATTGGTCAATTAACCGATGAATGTAG
ACGATGTGGGCAAAGACCGTTTCCATTCCGACGCAAAAGAGATGCAGCCA
ATGAAGATGAGAGTAATGTTCTAACAGATAAATCGGTGAAAAGTCTACCC
ATCTTCATTGCTGTTAGGGACGACGACGAAAGTAATTTTGCATTTGACTT
CAAAACTTTGAAAGCTGGTACTAAATCATGGACAGGTCTTGTTTACGTTG
GCGAAAAGATGGACTTTGATTTGTCTTTAAATGGAGCTTCTAATTCTATC
AAAACTTCGCCCCAAGATTGCTATGCAACTCGATTGGATGGAACCGGAAG
ATATGATTTGATCAAGAATAAATGGATTCTTCATTGATACAAAGGCAATT
CTTTGATACCTATAATGCAACATGTTTAATTGAACGAAACATTACAAGGC
AATGGAATATGAGTGTTGCAAAAAGAAGGACTATCAATTCAGAAGAAGCA
CCTGATAAGGCAACTTTGAAAGAATCTGGACGCAAATTATCCTCAAATGA
TCTTGGTGCTACGGAGACAACTGCACTGATTGTCATAGCTGGGTTGGTCG
GTTCGGTGTTGTGCGTGGCTATTGCTAAGAAGGTTTTCTTCAATAACCCA
GCAACGAAAGAGGTTCATCTACTTTCACCAAAGGAATAAATGCAGTGTCG
GTGGCGAAACTGGTGTCACCATCACATCAACTCCTCAAGATACAAGTCAC
TTTTCTTGGGAAATGGAAGCTTTCAGGTATTTTGGTGATTCTGATGGCAT
CATCATTACGTGCCGCATTTTGATCTGCCGAAGTCGTCCTATTGGTCAAT
TAACCGATGAATGTAGACGATGTGGGCAAAGACCGTTTCCATTCCGACGC
AAAAGAGATGCAGCCAATGAAGATGAGAGTAATGTTCTAACAGATAAATC
GGTGAAAAGTCTACCCATCTTCATTGCTGTTAGGGACGACGACGAAAGTA
ATTTTGCATTTGACTTCAAAACTTTGAAAGCTGGTACTAAATCATGGACA
GGTCTTGTTTACGTTGGCGAAAAGATGGACTTTGATTTGTCTTTAAATGG
AGCTTCTAATTCTATCAAAACTTCGCCCCAAGATTGCTATGCAACTCGAT
TGGATGGAACCGGAAGATATGATTTGATCAAGAATAAATGGATTCTTCAT
TGATACAAAGGCAATTCTTTGATACCTATAATGCAACATGTTTAATTGAA
CGAAACATTACAAGGCAATGGAATATGAGTGTTGCAAAAAGAAGGACTAT
CAATTCAGAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027529XLOC_027529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043859-exon-sc0004671-1575043694:4624..4742TCONS_00043859-exon-sc0004671-1575043694:4624..4742Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1575043694:4091..4483TCONS_00043859-exon-sc0004671-1575043694:4091..4483Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1575043694:3453..3651TCONS_00043859-exon-sc0004671-1575043694:3453..3651Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1575043694:2686..2984TCONS_00043859-exon-sc0004671-1575043694:2686..2984Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1575043694:1936..2479TCONS_00043859-exon-sc0004671-1575043694:1936..2479Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1510915933:4624..4742TCONS_00043859-exon-sc0004671-1510915933:4624..4742Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1510915933:4091..4483TCONS_00043859-exon-sc0004671-1510915933:4091..4483Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1510915933:3453..3651TCONS_00043859-exon-sc0004671-1510915933:3453..3651Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1510915933:2686..2984TCONS_00043859-exon-sc0004671-1510915933:2686..2984Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1510915933:1936..2479TCONS_00043859-exon-sc0004671-1510915933:1936..2479Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1491911889:4624..4742TCONS_00043859-exon-sc0004671-1491911889:4624..4742Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1491911889:4091..4483TCONS_00043859-exon-sc0004671-1491911889:4091..4483Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1491911889:3453..3651TCONS_00043859-exon-sc0004671-1491911889:3453..3651Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1491911889:2686..2984TCONS_00043859-exon-sc0004671-1491911889:2686..2984Clytia hemisphaericaexon
TCONS_00043859-exon-sc0004671-1491911889:1936..2479TCONS_00043859-exon-sc0004671-1491911889:1936..2479Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043859-proteinTCONS_00043859-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004671supercontigsc0004671:1936..4742 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.551394	0.497116	5.69897	6.87319	9.2084	8.74323	5.59489	5.45299	6.79533	5.20664	7.70613	9.52555	1.63982	2.00605	0.896104	1.51567	0.333014	0.402185	0.423898	0.799088	0.652453	0.864929	0.122974	0.156816	0.133863	0.432263
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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