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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043825 ID=TCONS_00043825|Name=TCONS_00043825|organism=Clytia hemisphaerica|type=transcript|length=1216bp
TTTTTtgagtcaaaacgcaatttgaCAGCCAGGCAAATTCTTGCATTTGT
AACggatcgaaatcgaaagtagcGCAAAAAAAGGCCAGTAGAAATACACT
GGCTTTTTTTTGGAATTCTATGCATTTACACTTGagtgaaaaattagaaa
tggttttaaaatcaattaacaccatttttttttgtttagaatCAGTAATA
AGAAGACGGATCAAAATTCAATAAGATATACCAGttttcatttttatggg
AATACAATTGCGATCATTTATCCAGGTGAAACGTGTATTTTCTACATTTT
CCAACGTCGTAATATCATATTGATACACATCCATTGGTGAGGGCGAGAAT
CTGGAAACCCTCTGGAGAATACCCTCGTATCAGAGATCCGGTGGAGCACT
CCGCCAGCCtccgccccactggaaaatttagccaaaaaaTAACCTGAAGT
TTTAACCCACTTTAAAACAACCAAATGACTTTACTCCTCATTTTTATCCA
CACTGAAGGACTCTGTGTCAAACTCTAACAAAGAGATCACACGTAAAAAC
ACTTTTCTACCTACAAATCAATCTAAAAGCAATAATCTTGAACAAGCTAA
TGAGTCTTTTCAAATTCCCAAGAGAACAAGTAAAAACGTGCAAACAAAAC
ATGGGGAGGCTATCACTTTGGAAAACAGATTCAATCCTTTGCAAGTTAAT
GACAAAATTAATGAGTCTTCTGATGAGAGAGAATCTAATGTAGCAAACTC
TGAAAACATCACAGagagaaagaagagaaaaaggaATAGAGGTAAAACAG
AGAGCAGAAGATATGTCGCGATTATTGGAGACTCGATTTTAAAAGAGGTA
AAAGGACATTTACTTTCTACACCAAAGGAAAATGTTGTTGTTAAATCTTT
TTCTGGAGCAACTACAACACAAATGTACGACTATTCAAAACCGACTTTAG
AAATGAAACCCGACCAACTTGTGATCCACGTGGGAACAAAtgatttgaag
aaaacttctAACAATGATGAAATTGTAGACAATATTGTGAAGCTTGCTTT
ACACTGCTATAACTCGAATGAAATACCGGTTGTTATATCCTCTCTAACTT
ATCGAGATGATAATTTCAAAGATAGGATTGGATTGATCAATGATCAACTG
AAAGCAAAGTGTGAAGAACGAAACATTGGGTACATCGACAACTCAAATAT
TGGAAAATTTCATCTT Run BLAST on NCBI transcript from alignment at sc0004634:4229..5787- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043825 ID=TCONS_00043825|Name=TCONS_00043825|organism=Clytia hemisphaerica|type=transcript|length=1559bp|location=Sequence derived from alignment at sc0004634:4229..5787- (Clytia hemisphaerica)
TTTTTTGAGTCAAAACGCAATTTGACAGCCAGGCAAATTCTTGCATTTGT
AACGGATCGAAATCGAAAGTAGCGCAAAAAAAGGCCAGTAGAAATACACT
GGCTTTTTTTTGGAATTCTATGCATTTACACTTGAGTGAAAAATTAGAAA
TGGTTTTAAAATCAATTAACACCATTTTTTTTTGTTTAGAATCAGTAATA
AGAAGACGGATCAAAATTCAATAAGATATACCAGGTAATCCTTTTTTATT
GTCTTTGTATTTTGATTTGGAATTTAAACACGCGTTCTTCTTGTGCTCTG
GGATGGGAGAAGGAATTTATCCACGCGGCCATAATTTCGATTTTCTGATG
CGGAACAATACGAAACTTAGAATACGGGCATCGTGATAACGATGTTTCAG
AATCCTGATCTTGCCACTCTATGCTTATTTTTAGTTCTCCAGCGGTCTAG
ATTGGATGAAATCACAACAATCCTTCCCTCGCTATTTCTTCTTTTTCTTT
TCAGTTTTCATTTTTATGGGAATACAATTGCGATCATTTATCCAGGTNCC
CTCGCTATTTCTTTTTTTTCTTTTCAGTTTTCATTTTTATGGGAATACAA
TTGCGATCATTTATCCAGGTGAAACGTGTATTTTCTACATTTTCCAACGT
CGTAATATCATATTGATACACATCCATTGGTGAGGGCGAGAATCTGGAAA
CCCTCTGGAGAATACCCTCGTATCAGAGATCCGGTGGAGCACTCCGCCAG
CCTCCGCCCCACTGGAAAATTTAGCCAAAAAATAACCTGAAGTTTTAACC
CACTTTAAAACAACCAAATGACTTTACTCCTCATTTTTATCCACACTGAA
GGACTCTGTGTCAAACTCTAACAAAGAGATCACACGTAAAAACACTTTTC
TACCTACAAATCAATCTAAAAGCAATAATCTTGAACAAGCTAATGAGTCT
TTTCAAATTCCCAAGAGAACAAGTAAAAACGTGCAAACAAAACATGGGGA
GGCTATCACTTTGGAAAACAGATTCAATCCTTTGCAAGTTAATGACAAAA
TTAATGAGTCTTCTGATGAGAGAGAATCTAATGTAGCAAACTCTGAAAAC
ATCACAGAGAGAAAGAAGAGAAAAAGGAATAGAGGTAAAACAGAGAGCAG
AAGATATGTCGCGATTATTGGAGACTCGATTTTAAAAGAGGTAAAAGGAC
ATTTACTTTCTACACCAAAGGAAAATGTTGTTGTTAAATCTTTTTCTGGA
GCAACTACAACACAAATGTACGACTATTCAAAACCGACTTTAGAAATGAA
ACCCGACCAACTTGTGATCCACGTGGGAACAAATGATTTGAAGAAAACTT
CTAACAATGATGAAATTGTAGACAATATTGTGAAGCTTGCTTTACACTGC
TATAACTCGAATGAAATACCGGTTGTTATATCCTCTCTAACTTATCGAGA
TGATAATTTCAAAGATAGGATTGGATTGATCAATGATCAACTGAAAGCAA
AGTGTGAAGAACGAAACATTGGGTACATCGACAACTCAAATATTGGAAAA
TTTCATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043825-exon-sc0004634-1575043694:5554..5787 | TCONS_00043825-exon-sc0004634-1575043694:5554..5787 | Clytia hemisphaerica | exon |
| TCONS_00043825-exon-sc0004634-1575043694:4229..5210 | TCONS_00043825-exon-sc0004634-1575043694:4229..5210 | Clytia hemisphaerica | exon |
| TCONS_00043825-exon-sc0004634-1510915933:5554..5787 | TCONS_00043825-exon-sc0004634-1510915933:5554..5787 | Clytia hemisphaerica | exon |
| TCONS_00043825-exon-sc0004634-1510915933:4229..5210 | TCONS_00043825-exon-sc0004634-1510915933:4229..5210 | Clytia hemisphaerica | exon |
| TCONS_00043825-exon-sc0004634-1491911889:5554..5787 | TCONS_00043825-exon-sc0004634-1491911889:5554..5787 | Clytia hemisphaerica | exon |
| TCONS_00043825-exon-sc0004634-1491911889:4229..5210 | TCONS_00043825-exon-sc0004634-1491911889:4229..5210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004634 | supercontig | sc0004634:4229..5787 - |
Blast
The following BLAST results are available for this feature:
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