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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043824 ID=TCONS_00043824|Name=TCONS_00043824|organism=Clytia hemisphaerica|type=transcript|length=1154bp
gtgaaaaattagaaatggttttaaaatcaattaacaccatttttttttgt
ttagaatCAGTAATAAGAAGACGGATCAAAATTCAATAAGATATACCAGt
tttcatttttatgggAATACAATTGCGATCATTTATCCAGGTNCCCTcgc
tatttcttttttttcttttcagttttcatttttatgggAATACAATTGCG
ATCATTTATCCAGGTGAAACGTGTATTTTCTACATTTTCCAACGTCGTAA
TATCATATTGATACACATCCATTGGTGAGGGCGAGAATCTGGAAACCCTC
TGGAGAATACCCTCGTATCAGAGATCCGGTGGAGCACTCCGCCAGCCtcc
gccccactggaaaatttagccaaaaaaTAACCTGAAGTTTTAACCCACTT
TAAAACAACCAAATGACTTTACTCCTCATTTTTATCCACACTGAAGGACT
CTGTGTCAAACTCTAACAAAGAGATCACACGTAAAAACACTTTTCTACCT
ACAAATCAATCTAAAAGCAATAATCTTGAACAAGCTAATGAGTCTTTTCA
AATTCCCAAGAGAACAAGTAAAAACGTGCAAACAAAACATGGGGAGGCTA
TCACTTTGGAAAACAGATTCAATCCTTTGCAAGTTAATGACAAAATTAAT
GAGTCTTCTGATGAGAGAGAATCTAATGTAGCAAACTCTGAAAACATCAC
AGagagaaagaagagaaaaaggaATAGAGGTAAAACAGAGAGCAGAAGAT
ATGTCGCGATTATTGGAGACTCGATTTTAAAAGAGGTAAAAGGACATTTA
CTTTCTACACCAAAGGAAAATGTTGTTGTTAAATCTTTTTCTGGAGCAAC
TACAACACAAATGTACGACTATTCAAAACCGACTTTAGAAATGAAACCCG
ACCAACTTGTGATCCACGTGGGAACAAAtgatttgaagaaaacttctAAC
AATGATGAAATTGTAGACAATATTGTGAAGCTTGCTTTACACTGCTATAA
CTCGAATGAAATACCGGTTGTTATATCCTCTCTAACTTATCGAGATGATA
ATTTCAAAGATAGGATTGGATTGATCAATGATCAACTGAAAGCAAAGTGT
GAAGAACGAAACATTGGGTACATCGACAACTCAAATATTGGAAAATTTCA
TCTT Run BLAST on NCBI transcript from alignment at sc0004634:4229..5652- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043824 ID=TCONS_00043824|Name=TCONS_00043824|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at sc0004634:4229..5652- (Clytia hemisphaerica)
GTGAAAAATTAGAAATGGTTTTAAAATCAATTAACACCATTTTTTTTTGT
TTAGAATCAGTAATAAGAAGACGGATCAAAATTCAATAAGATATACCAGG
TAATCCTTTTTTATTGTCTTTGTATTTTGATTTGGAATTTAAACACGCGT
TCTTCTTGTGCTCTGGGATGGGAGAAGGAATTTATCCACGCGGCCATAAT
TTCGATTTTCTGATGCGGAACAATACGAAACTTAGAATACGGGCATCGTG
ATAACGATGTTTCAGAATCCTGATCTTGCCACTCTATGCTTATTTTTAGT
TCTCCAGCGGTCTAGATTGGATGAAATCACAACAATCCTTCCCTCGCTAT
TTCTTCTTTTTCTTTTCAGTTTTCATTTTTATGGGAATACAATTGCGATC
ATTTATCCAGGTNCCCTCGCTATTTCTTTTTTTTCTTTTCAGTTTTCATT
TTTATGGGAATACAATTGCGATCATTTATCCAGGTGAAACGTGTATTTTC
TACATTTTCCAACGTCGTAATATCATATTGATACACATCCATTGGTGAGG
GCGAGAATCTGGAAACCCTCTGGAGAATACCCTCGTATCAGAGATCCGGT
GGAGCACTCCGCCAGCCTCCGCCCCACTGGAAAATTTAGCCAAAAAATAA
CCTGAAGTTTTAACCCACTTTAAAACAACCAAATGACTTTACTCCTCATT
TTTATCCACACTGAAGGACTCTGTGTCAAACTCTAACAAAGAGATCACAC
GTAAAAACACTTTTCTACCTACAAATCAATCTAAAAGCAATAATCTTGAA
CAAGCTAATGAGTCTTTTCAAATTCCCAAGAGAACAAGTAAAAACGTGCA
AACAAAACATGGGGAGGCTATCACTTTGGAAAACAGATTCAATCCTTTGC
AAGTTAATGACAAAATTAATGAGTCTTCTGATGAGAGAGAATCTAATGTA
GCAAACTCTGAAAACATCACAGAGAGAAAGAAGAGAAAAAGGAATAGAGG
TAAAACAGAGAGCAGAAGATATGTCGCGATTATTGGAGACTCGATTTTAA
AAGAGGTAAAAGGACATTTACTTTCTACACCAAAGGAAAATGTTGTTGTT
AAATCTTTTTCTGGAGCAACTACAACACAAATGTACGACTATTCAAAACC
GACTTTAGAAATGAAACCCGACCAACTTGTGATCCACGTGGGAACAAATG
ATTTGAAGAAAACTTCTAACAATGATGAAATTGTAGACAATATTGTGAAG
CTTGCTTTACACTGCTATAACTCGAATGAAATACCGGTTGTTATATCCTC
TCTAACTTATCGAGATGATAATTTCAAAGATAGGATTGGATTGATCAATG
ATCAACTGAAAGCAAAGTGTGAAGAACGAAACATTGGGTACATCGACAAC
TCAAATATTGGAAAATTTCATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043824-exon-sc0004634-1575043694:5554..5652 | TCONS_00043824-exon-sc0004634-1575043694:5554..5652 | Clytia hemisphaerica | exon |
| TCONS_00043824-exon-sc0004634-1575043694:4229..5283 | TCONS_00043824-exon-sc0004634-1575043694:4229..5283 | Clytia hemisphaerica | exon |
| TCONS_00043824-exon-sc0004634-1510915933:5554..5652 | TCONS_00043824-exon-sc0004634-1510915933:5554..5652 | Clytia hemisphaerica | exon |
| TCONS_00043824-exon-sc0004634-1510915933:4229..5283 | TCONS_00043824-exon-sc0004634-1510915933:4229..5283 | Clytia hemisphaerica | exon |
| TCONS_00043824-exon-sc0004634-1491911889:5554..5652 | TCONS_00043824-exon-sc0004634-1491911889:5554..5652 | Clytia hemisphaerica | exon |
| TCONS_00043824-exon-sc0004634-1491911889:4229..5283 | TCONS_00043824-exon-sc0004634-1491911889:4229..5283 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004634 | supercontig | sc0004634:4229..5652 - |
Blast
The following BLAST results are available for this feature:
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