TCONS_00043822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043822
Unique NameTCONS_00043822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043822 ID=TCONS_00043822|Name=TCONS_00043822|organism=Clytia hemisphaerica|type=transcript|length=349bp
tctcGGTGTCGTAATCTCGAATAATCTCTCTTGGAAGAATCACATCGATC
TTGCCACTTCTAAAGCAAATAACACCCGAATATTCTTTCAGAGGAACCTA
TCAATGGCCAAAATGGCAGACAAAGAAACACGTCTGAAGTGTTATAAAAC
TTTTATCAGACCAACGGTGGAATATGCAAACACTGTATGGGATCCCACTG
ATAACCAATCCCTTACCCAGAAAATTGAAATGATTCAGAGAAAATCTATC
CGCTGGATCTGTAGGGAATGGAGTTCAGAAGTCAGCCCAAACGATCTAAG
GAAATCACTTAAACTTGAAACACTGGAAACAAGGAGATCCAAATCGaaa
Run BLAST on NCBI

protein sequence of TCONS_00043822-protein

>TCONS_00043822-protein ID=TCONS_00043822-protein|Name=TCONS_00043822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
LGVVISNNLSWKNHIDLATSKANNTRIFFQRNLSMAKMADKETRLKCYKT
FIRPTVEYANTVWDPTDNQSLTQKIEMIQRKSIRWICREWSSEVSPNDLR
KSLKLETLETRRSKSK
Run BLAST on NCBI

transcript from alignment at sc0004631:1456..1804

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043822 ID=TCONS_00043822|Name=TCONS_00043822|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at sc0004631:1456..1804 (Clytia hemisphaerica)
tttCGATTTGGATCTCCTTGTTTCCAGTGTTTCAAGTTTAAGTGATTTCC
TTAGATCGTTTGGGCTGACTTCTGAACTCCATTCCCTACAGATCCAGCGG
ATAGATTTTCTCTGAATCATTTCAATTTTCTGGGTAAGGGATTGGTTATC
AGTGGGATCCCATACAGTGTTTGCATATTCCACCGTTGGTCTGATAAAAG
TTTTATAACACTTCAGACGTGTTTCTTTGTCTGCCATTTTGGCCATTGAT
AGGTTCCTCTGAAAGAATATTCGGGTGTTATTTGCTTTAGAAGTGGCAAG
ATCGATGTGATTCTTCCAAGAGAGATTATTCGAGATTACGACACCgaga

Coding sequence (CDS) from alignment at sc0004631:1456..1804

>TCONS_00043822 ID=TCONS_00043822|Name=TCONS_00043822|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0004631:1456..1804 (Clytia hemisphaerica)
tttCGATTTGGATCTCCTTGTTTCCAGTGTTTCAAGTTTAAGTGATTTCC
TTAGATCGTTTGGGCTGACTTCTGAACTCCATTCCCTACAGATCCAGCGG
ATAGATTTTCTCTGAATCATTTCAATTTTCTGGGTAAGGGATTGGTTATC
AGTGGGATCCCATACAGTGTTTGCATATTCCACCGTTGGTCTGATAAAAG
TTTTATAACACTTCAGACGTGTTTCTTTGTCTGCCATTTTGGCCATTGAT
AGGTTCCTCTGAAAGAATATTCGGGTGTTATTTGCTTTAGAAGTGGCAAG
ATCGATGTGATTCTTCCAAGAGAGATTATTCGAGATTACGACACCgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027496XLOC_027496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043822-exon-sc0004631-1491911889:1456..1804TCONS_00043822-exon-sc0004631-1491911889:1456..1804Clytia hemisphaericaexon
TCONS_00043822-exon-sc0004631-1510915933:1456..1804TCONS_00043822-exon-sc0004631-1510915933:1456..1804Clytia hemisphaericaexon
TCONS_00043822-exon-sc0004631-1575043694:1456..1804TCONS_00043822-exon-sc0004631-1575043694:1456..1804Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043822-proteinTCONS_00043822-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004631supercontigsc0004631:1456..1804 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.421403	0.813532	3.3057	1.48376	4.8897	1.76033	1.54623	2.28924	0.854182	1.25152	0	1.11933	2.22421	0.905095	1.20503	2.28942	2.2174	1.88311	1.66343	3.6195	1.87873	0.990749	0.892341	1.00608	1.72076	1.53041	1.5321	0.506197	2.51495	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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