TCONS_00043809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043809
Unique NameTCONS_00043809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043809 ID=TCONS_00043809|Name=TCONS_00043809|organism=Clytia hemisphaerica|type=transcript|length=355bp
GGGTATTTTTGTTAACAGGGGACCAAAAAAATATGTTATAAAAATGCGCT
ATAATGGGATTTTCTCATTTTCGGGTCGATTCAATTGCATGAATTTTCAC
CATTCTGTTTCGTTGAATGAATCATACTTTGTGTGATGTGGGTGTGGTAT
TATATGCCCTACAGTCAAATAAAAGCAGATATGGAAACAGATTGTTTTGT
CTATGTTTGGTAACCTATAGTTAATTAACCAGGTATCATTGATCAATCAC
ATATCCACCATTGTCCACGCTGGTTATATTAGTTATATTACTATATTTCT
ATTGTATTTTCTCATCAATGTTCTTGTAAATAATACAGTTtctaagaaga
aaaaa
Run BLAST on NCBI

transcript from alignment at sc0004606:2487..2841

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043809 ID=TCONS_00043809|Name=TCONS_00043809|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0004606:2487..2841 (Clytia hemisphaerica)
ttttttcttcttagaAACTGTATTATTTACAAGAACATTGATGAGAAAAT
ACAATAGAAATATAGTAATATAACTAATATAACCAGCGTGGACAATGGTG
GATATGTGATTGATCAATGATACCTGGTTAATTAACTATAGGTTACCAAA
CATAGACAAAACAATCTGTTTCCATATCTGCTTTTATTTGACTGTAGGGC
ATATAATACCACACCCACATCACACAAAGTATGATTCATTCAACGAAACA
GAATGGTGAAAATTCATGCAATTGAATCGACCCGAAAATGAGAAAATCCC
ATTATAGCGCATTTTTATAACATATTTTTTTGGTCCCCTGTTAACAAAAA
TACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027483XLOC_027483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043809-exon-sc0004606-1491911889:2487..2841TCONS_00043809-exon-sc0004606-1491911889:2487..2841Clytia hemisphaericaexon
TCONS_00043809-exon-sc0004606-1510915933:2487..2841TCONS_00043809-exon-sc0004606-1510915933:2487..2841Clytia hemisphaericaexon
TCONS_00043809-exon-sc0004606-1575043694:2487..2841TCONS_00043809-exon-sc0004606-1575043694:2487..2841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004606supercontigsc0004606:2487..2841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.728994	0.947846	1.37567	0.538353	5.57084	2.33055	5.31101	4.9721	2.66201	3.55097	1.72333	2.42753	0	0	0	0	0	0	0	0	0.704833	0.343793	0.557234	0.253303	0.260896	0	0	0	0	1.09916
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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