TCONS_00043804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043804
Unique NameTCONS_00043804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043804 ID=TCONS_00043804|Name=TCONS_00043804|organism=Clytia hemisphaerica|type=transcript|length=564bp
tttttcgaatgtgaaaaaaatatttaaaaacctTCACGTAGCCGAGACGA
GACATAAGACAAAATATCCTCAAATATGGAGAGCAAGTCATTACCTTTTA
TCTACATCCACAAGGTAAAAGCACTCTCCTTCTAGGAAGCTTAAAATCAT
GGCCGAGGTGAGCCATAACGAGTGGGAAAGTCCCTATATCGATGGCGCGT
GTCGAAGAGTAAACAGAAAGGGCAAAAAACAAAAGACTGATTAAGATTGT
TTAATTGTTAAACTTGCAGAATCAAAATTCGCGTGttagatttttaaaag
attctctttctttctttttctctctttgaTTCTGTGTTCTCAAGTACAAC
GCGTTTTAGAATAGAATAAGGCTTCATCATTAAAATTATTACAAATATGG
CAAATCGTGACAAATACAACAATTATGAATTAATAATGAAGAAGAAACGT
CAGTCAGGTGGACGACAGCCAGCTAAACCTAAAAACGCCAACAATTTAGT
AGCCCCGAAGGAGATAACagtgcaaaaaatgaaaacaaagccGAAACAGA
CAACCATGAAGTAC
Run BLAST on NCBI

transcript from alignment at sc0004601:2..719-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043804 ID=TCONS_00043804|Name=TCONS_00043804|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at sc0004601:2..719- (Clytia hemisphaerica)
TTTTTCGAATGTGAAAAAAATATTTAAAAACCTTCACGTAGCCGAGACGA
GACATAAGACAAAATATCCTCAAATATGGAGAGCAAGTCATTACCTTTTA
TCTACATCCACAAGGTAAAAGCACTCTCCTTCTAGGAAGCTTAAAATCAT
GGCCGAGGTGAGCCATAACGAGTGGGAAAGTCCCTATATCGATGGCGCGT
GTCGAAGAGTAAACAGAAAGGGCAAAAAACAAAAGACTGATTAAGATTGT
TTAATTGTTAAACTTGCAGAATCAAAATTCGCGTGTTAGATTTTTAAAAG
ATTCTCTTTCTTTCTTTTTCTCTCTTTGATTCTGTGTTCTCAAGTACAAC
GCGTTTTAGAATAGAATAAGGCTTCATCATTAAAATTATTACAAATATGG
CAAATCGTGACAAATACAACAATTATGAATTAATAATGAAGAAGAAACGT
CAGTCAGGTATTCAATATTTATTTTCCAAAAGTTTGATTATGAGTTGTAG
CTAAAATTACATAAATAATTTGAATGCAAAATATTTTAGTTTATTTACTA
AAGATCTGTTTATTGTTTAAACGATCGAAAGCCTACTACCAAAAGATCTA
TTCCTTTTCAGGTGGACGACAGCCAGCTAAACCTAAAAACGCCAACAATT
TAGTAGCCCCGAAGGAGATAACAGTGCAAAAAATGAAAACAAAGCCGAAA
CAGACAACCATGAAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027478XLOC_027478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043804-exon-sc0004601-1575043694:263..719TCONS_00043804-exon-sc0004601-1575043694:263..719Clytia hemisphaericaexon
TCONS_00043804-exon-sc0004601-1575043694:2..108TCONS_00043804-exon-sc0004601-1575043694:2..108Clytia hemisphaericaexon
TCONS_00043804-exon-sc0004601-1510915933:263..719TCONS_00043804-exon-sc0004601-1510915933:263..719Clytia hemisphaericaexon
TCONS_00043804-exon-sc0004601-1510915933:2..108TCONS_00043804-exon-sc0004601-1510915933:2..108Clytia hemisphaericaexon
TCONS_00043804-exon-sc0004601-1491911889:263..719TCONS_00043804-exon-sc0004601-1491911889:263..719Clytia hemisphaericaexon
TCONS_00043804-exon-sc0004601-1491911889:2..108TCONS_00043804-exon-sc0004601-1491911889:2..108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004601supercontigsc0004601:2..719 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0999373	0.0974546	0.113154	0	0.808626	0.212996	1.02788	0.721718	1.51587	0.521571	1.0125	0.665577	0.265861	1.58757	0.73772	0.243596	0.750226	1.30723	0.318707	0.667007	2.12575	1.5553	0.343758	0.208351	0.107298	0.478806	0	0.292493	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top