TCONS_00043803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043803
Unique NameTCONS_00043803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043803 ID=TCONS_00043803|Name=TCONS_00043803|organism=Clytia hemisphaerica|type=transcript|length=372bp
TTCCCTGCTCTTCTTTCTCTGGAAATCTTACAGTTGCTATATCTGACCAT
CTTCcacaatttctaattttgaatacTGACTGTGACTCTAAGTACAAACC
TGAACTTCCTTTTCGTCGAGATTGGTCTAGATTTGACGAGGCTAGTTTCA
AAGAAGAGTTTGATAGCGTTAATTGGAATGGTcttcttgaaattgaaaag
ggAAATGTTGACTCatcttttgattcttttttgacTCGTTTTACTTCTTT
GTATGATAAGCATGTTCCTTTGAGACAGTTGACCAGACGTCAAGCTAACC
TTCTACTCAAACCTTGGATCACCAAAGGTATTCTCGTCTCTATGAACATC
AGAGATAGCCTTAAAACCGACT
Run BLAST on NCBI

protein sequence of TCONS_00043803-protein

>TCONS_00043803-protein ID=TCONS_00043803-protein|Name=TCONS_00043803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
PCSSFSGNLTVAISDHLPQFLILNTDCDSKYKPELPFRRDWSRFDEASFK
EEFDSVNWNGLLEIEKGNVDSSFDSFLTRFTSLYDKHVPLRQLTRRQANL
LLKPWITKGILVSMNIRDSLKTD
Run BLAST on NCBI

transcript from alignment at sc0004598:5794..6165

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043803 ID=TCONS_00043803|Name=TCONS_00043803|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at sc0004598:5794..6165 (Clytia hemisphaerica)
AGTCGGTTTTAAGGCTATCTCTGATGTTCATAGAGACGAGAATACCTTTG
GTGATCCAAGGTTTGAGTAGAAGGTTAGCTTGACGTCTGGTCAACTGTCT
CAAAGGAACATGCTTATCATACAAAGAAGTAAAACGAgtcaaaaaagaat
caaaagatGAGTCAACATTTcccttttcaatttcaagaagACCATTCCAA
TTAACGCTATCAAACTCTTCTTTGAAACTAGCCTCGTCAAATCTAGACCA
ATCTCGACGAAAAGGAAGTTCAGGTTTGTACTTAGAGTCACAGTCAgtat
tcaaaattagaaattgtgGAAGATGGTCAGATATAGCAACTGTAAGATTT
CCAGAGAAAGAAGAGCAGGGAA

Coding sequence (CDS) from alignment at sc0004598:5794..6165

>TCONS_00043803 ID=TCONS_00043803|Name=TCONS_00043803|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0004598:5794..6165 (Clytia hemisphaerica)
GTCGGTTTTAAGGCTATCTCTGATGTTCATAGAGACGAGAATACCTTTGG
TGATCCAAGGTTTGAGTAGAAGGTTAGCTTGACGTCTGGTCAACTGTCTC
AAAGGAACATGCTTATCATACAAAGAAGTAAAACGAgtcaaaaaagaatc
aaaagatGAGTCAACATTTcccttttcaatttcaagaagACCATTCCAAT
TAACGCTATCAAACTCTTCTTTGAAACTAGCCTCGTCAAATCTAGACCAA
TCTCGACGAAAAGGAAGTTCAGGTTTGTACTTAGAGTCACAGTCAgtatt
caaaattagaaattgtgGAAGATGGTCAGATATAGCAACTGTAAGATTTC
CAGAGAAAGAAGAGCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027477XLOC_027477Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043803-proteinTCONS_00043803-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043803-exon-sc0004598-1491911889:5794..6165TCONS_00043803-exon-sc0004598-1491911889:5794..6165Clytia hemisphaericaexon
TCONS_00043803-exon-sc0004598-1510915933:5794..6165TCONS_00043803-exon-sc0004598-1510915933:5794..6165Clytia hemisphaericaexon
TCONS_00043803-exon-sc0004598-1575043694:5794..6165TCONS_00043803-exon-sc0004598-1575043694:5794..6165Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004598supercontigsc0004598:5794..6165 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46948	0.424496	1.39382	0.482206	1.17408	0	2.23864	1.04789	0.366827	1.36312	1.10257	0.724785	0.723777	0.45099	0.162907	0	0.653571	2.28361	1.6196	0.242114	0.955612	0.615875	0.499118	0.328932	0.233686	1.25136	0.298448	0.318512	0.48316	1.43315
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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