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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043802 ID=TCONS_00043802|Name=TCONS_00043802|organism=Clytia hemisphaerica|type=transcript|length=1189bp
ATGATCGCAGGTTCGACAAGTCAAGCAGATGGATTAGAACGGTCCAAAAT
TGACAAACTTGGTGAAACGTGGCAGGAAATCACTCTTTTACGGCAACAGA
TTCGGGATCTTGATCGCACCATCAATTTGGTTCATGATGCCATTGCTCAA
AACATTGCCAAAGATCCTGCACACGAGAAAGAAATAAGAGCTGTTTATGA
ACCCCGTCTGTTACACTTGTCTGACTTGGTTGATAAGAAAGTAAGCACAT
TTGTTATACATATTTTAGTGCTTTTGAGATTATGCAACATGATAAACTTA
ATAATACAATAAGTTGTCATGTATCCTAAGTCTTTGAGCCATTTATATTA
GCCTTAGTTATTGTCAGATCCTACTTTATAGTTGACATGGGAACCTCAAA
TGGACATATGAATTCATTCTCTACTTTCAGGAGAAAAAAGTTGATATACT
GTTCAAGGATAATCCCTTCAAAGAACTAAAAGGTGGTGGCCCTTGTGTTA
GAGGTTTGGATGATGTTCTTAAAAAGTGTCATGTGCATAGGCAAGCTTAC
CATGGTAAATCATTTGTTGGCAACCATGTTGACAGAATGCTCAAGACAAA
GAACCTAGAGCTCTTGTGTGACTCAATTCCAGAGAAAATTGCTGAGTTTG
AATTGAATGACACAAACATTACAAATTGGGGTGATATTTTGTGTTCGAAC
TTCAAAGATCTGTTCAAAAAATATGCAATTTGCCATAAGATGATCAATTC
AAGCAAAACTTTTTCAACTTCAGACATTGATCAACTAGAGACAGCAATTG
ATGACTTACTATCATTCTTTCGTGAAACGTTTCCAGATCAAAGCATCACA
CCAAAGTTACACCTTCTAGAGGATCATGTCGTTCCATTTTTACGACGATG
GTCCATTGGTTTCGGCCTCTATGGTGAGCAAGGAATGGAGGCATTGCATA
TTCCACGATTAATGATATGCTGGACTTGTTCATCTCAATGCCTGATAAAA
ATGCTCAGTTGGAATCATTACTGGGAGAGAGCACTATGCCAGAGTGAATC
CTTTAGCAAAGGCAGTTGATTTGAAACCAAAGAAGAGAAATCTGAAAAGG
AAGAGAGaggaataaaaattttaatttgaagtAGAGAATAATGATTGTTC
CATTTTATTTATAGTTTTCATATAGTTTTATATTTTAAT Run BLAST on NCBI protein sequence of TCONS_00043802-protein >TCONS_00043802-protein ID=TCONS_00043802-protein|Name=TCONS_00043802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MLKTKNLELLCDSIPEKIAEFELNDTNITNWGDILCSNFKDLFKKYAICH
KMINSSKTFSTSDIDQLETAIDDLLSFFRETFPDQSITPKLHLLEDHVVP
FLRRWSIGFGLYGEQGMEALHIPRLMICWTCSSQCLIKMLSWNHYWERAL
CQSESFSKGS Run BLAST on NCBI transcript from alignment at sc0004598:1914..3499- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043802 ID=TCONS_00043802|Name=TCONS_00043802|organism=Clytia hemisphaerica|type=transcript|length=1586bp|location=Sequence derived from alignment at sc0004598:1914..3499- (Clytia hemisphaerica)
ATGATCGCAGGTTCGACAAGTCAAGCAGATGGATTAGAACGGTCCAAAAT
TGACAAACTTGGTGAAACGTGGCAGGAAATCACTCTTTTACGGCAACAGA
TTCGGGATCTTGATCGCACCATCAATTTGGTTCATGATGCCATTGCTCAA
AACATTGCCAAAGATCCTGCACACGAGAAAGAAATAAGAGCTGTTTATGA
ACCCCGTCTGTTACACTTGTCTGACTTGGTTGATAAGAAAGTAAGCACAT
TTGTTATACATATTTTAGTGCTTTTGAGATTATGCAACATGATAAACTTA
ATAATACAATAAGTTGTCATGTATCCTAAGTCTTTGAGCCATTTATATTA
GCCTTAGTTATTGTCAGATCCTACTTTATAGTTGACATGGGAACCTCAAA
TGGACATATGAATTCATTCTCTACTTTCAGGAGAAAAAAGTTGATATACT
GTTCAAGGATAATCCCTTCAAAGAACTAAAAGGTGGTGGCCCTTGTGTTA
GAGGTTTGGATGATGTTCTTAAAAAGTGTCATGTGCATAGGCAAGCTTAC
CATGGTAAATCATTTGTTGGCAACCATGTTGACAGAATGCTCAAGGTTAG
CTTATTCTTGAAACTTCAAATATCTTTGAGTAGATCTAACCTGAAAGGAA
ATTTTGAACAGAGGTTACAACCTGCAAACACGCGTCTTAAAATTAGTGTC
TCTTAGTAATTTATTACAAAAAACATATTTTGTTGTTGCAAAAATAGTGG
AAAAACTTATATCTTCCAGTAGTATCGCCCAATCCAATAAAAGATTTTTT
CCTTTCAGACAAAGAACCTAGAGCTCTTGTGTGACTCAATTCCAGAGAAA
ATTGCTGAGTTTGAATTGAATGACACAAACATTACAAATTGGGGTGATAT
TTTGTGTTCGAACTTCAAAGATCTGTTCAAAAAATATGCAATTTGCCATA
AGATGATCAATTCAAGCAAAACTTTTTCAACTTCAGACATTGATCAACTA
GGTATATATTTGTTTTTATTTTTTATTCATTTCAATCACACAAAATTATA
TAAAGAAAATCATTGAAAAGTTTGGCATTACCACTAAGACGATACGTCCA
AATTTTTGTATGCCAGTCCCATAGGACTGTAGGATTTTTAGAATTAAACT
TCTTAAGATTTATCAAAATTTGTTCCTTTTTATAGAGACAGCAATTGATG
ACTTACTATCATTCTTTCGTGAAACGTTTCCAGATCAAAGCATCACACCA
AAGTTACACCTTCTAGAGGATCATGTCGTTCCATTTTTACGACGATGGTC
CATTGGTTTCGGCCTCTATGGTGAGCAAGGAATGGAGGCATTGCATATTC
CACGATTAATGATATGCTGGACTTGTTCATCTCAATGCCTGATAAAAATG
CTCAGTTGGAATCATTACTGGGAGAGAGCACTATGCCAGAGTGAATCCTT
TAGCAAAGGCAGTTGATTTGAAACCAAAGAAGAGAAATCTGAAAAGGAAG
AGAGAGGAATAAAAATTTTAATTTGAAGTAGAGAATAATGATTGTTCCAT
TTTATTTATAGTTTTCATATAGTTTTATATTTTAAT Coding sequence (CDS) from alignment at sc0004598:1914..3499- >TCONS_00043802 ID=TCONS_00043802|Name=TCONS_00043802|organism=Clytia hemisphaerica|type=CDS|length=1449bp|location=Sequence derived from alignment at sc0004598:1914..3499- (Clytia hemisphaerica)
AGACAGCAATTGATGACTTACTATCATTCTTTCGTGAAACGTTTCCAGAT
CAAAGCATCACACCAAAGTTACACCTTCTAGAGGATCATGTCGTTCCATT
TTTACGACGATGGTCCATTGGTTTCGGCCTCTATGGTGAGCAAGGAATGG
AGGCATTGCATATTCCACGATTAATGATATGCTGGACTTGTTCATCTCAA
TGCCTGATAAAAATGCTCAGTTGGAATCATTACTGGGAGAGAGCACTATG
CCAGAGTGAATCCTTTAGCAAAGGCAGTTGAACAAAGAACCTAGAGCTCT
TGTGTGACTCAATTCCAGAGAAAATTGCTGAGTTTGAATTGAATGACACA
AACATTACAAATTGGGGTGATATTTTGTGTTCGAACTTCAAAGATCTGTT
CAAAAAATATGCAATTTGCCATAAGATGATCAATTCAAGCAAAACTTTTT
CAACTTCAGACATTGATCAACTAGATGCTCAAGAGACAGCAATTGATGAC
TTACTATCATTCTTTCGTGAAACGTTTCCAGATCAAAGCATCACACCAAA
GTTACACCTTCTAGAGGATCATGTCGTTCCATTTTTACGACGATGGTCCA
TTGGTTTCGGCCTCTATGGTGAGCAAGGAATGGAGGCATTGCATATTCCA
CGATTAATGATATGCTGGACTTGTTCATCTCAATGCCTGATAAAAATGCT
CAGTTGGAATCATTACTGGGAGAGAGCACTATGCCAGAGTGAATCCTTTA
GCAAAGGCAGTTGAACAAAGAACCTAGAGCTCTTGTGTGACTCAATTCCA
GAGAAAATTGCTGAGTTTGAATTGAATGACACAAACATTACAAATTGGGG
TGATATTTTGTGTTCGAACTTCAAAGATCTGTTCAAAAAATATGCAATTT
GCCATAAGATGATCAATTCAAGCAAAACTTTTTCAACTTCAGACATTGAT
CAACTAGATGCTCAAGAGACAGCAATTGATGACTTACTATCATTCTTTCG
TGAAACGTTTCCAGATCAAAGCATCACACCAAAGTTACACCTTCTAGAGG
ATCATGTCGTTCCATTTTTACGACGATGGTCCATTGGTTTCGGCCTCTAT
GGTGAGCAAGGAATGGAGGCATTGCATATTCCACGATTAATGATATGCTG
GACTTGTTCATCTCAATGCCTGATAAAAATGCTCAGTTGGAATCATTACT
GGGAGAGAGCACTATGCCAGAGTGAATCCTTTAGCAAAGGCAGTTGAACA
AAGAACCTAGAGCTCTTGTGTGACTCAATTCCAGAGAAAATTGCTGAGTT
TGAATTGAATGACACAAACATTACAAATTGGGGTGATATTTTGTGTTCGA
ACTTCAAAGATCTGTTCAAAAAATATGCAATTTGCCATAAGATGATCAAT
TCAAGCAAAACTTTTTCAACTTCAGACATTGATCAACTAGATGCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043802-exon-sc0004598-1575043694:2905..3499 | TCONS_00043802-exon-sc0004598-1575043694:2905..3499 | Clytia hemisphaerica | exon |
| TCONS_00043802-exon-sc0004598-1575043694:2499..2691 | TCONS_00043802-exon-sc0004598-1575043694:2499..2691 | Clytia hemisphaerica | exon |
| TCONS_00043802-exon-sc0004598-1575043694:1914..2314 | TCONS_00043802-exon-sc0004598-1575043694:1914..2314 | Clytia hemisphaerica | exon |
| TCONS_00043802-exon-sc0004598-1510915933:2905..3499 | TCONS_00043802-exon-sc0004598-1510915933:2905..3499 | Clytia hemisphaerica | exon |
| TCONS_00043802-exon-sc0004598-1510915933:2499..2691 | TCONS_00043802-exon-sc0004598-1510915933:2499..2691 | Clytia hemisphaerica | exon |
| TCONS_00043802-exon-sc0004598-1510915933:1914..2314 | TCONS_00043802-exon-sc0004598-1510915933:1914..2314 | Clytia hemisphaerica | exon |
| TCONS_00043802-exon-sc0004598-1491911889:2905..3499 | TCONS_00043802-exon-sc0004598-1491911889:2905..3499 | Clytia hemisphaerica | exon |
| TCONS_00043802-exon-sc0004598-1491911889:2499..2691 | TCONS_00043802-exon-sc0004598-1491911889:2499..2691 | Clytia hemisphaerica | exon |
| TCONS_00043802-exon-sc0004598-1491911889:1914..2314 | TCONS_00043802-exon-sc0004598-1491911889:1914..2314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004598 | supercontig | sc0004598:1914..3499 - |
Blast
The following BLAST results are available for this feature:
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