TCONS_00043800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043800
Unique NameTCONS_00043800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length798

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043800 ID=TCONS_00043800|Name=TCONS_00043800|organism=Clytia hemisphaerica|type=transcript|length=798bp
TATAATTCAATTTCAATATGTTTTACCGTTACCAACCATTAATTATTGta
aataaattccaaaaatatcaactaaaattaactaaaattttatttacaaa
acAAATAGAACTCCTAATGTTTCAATTTAAATGCTAgaattgcagaaaaa
aattCTGATATCATTTTAGAAAGAGTAGTAAAGTTACTGAGTTGGGGGAT
AAACCCAATCAAGGTCATCCTGTGGTCATTAAAAAGTTTCATAATTGGAA
ATACATATCCTAAATATCACTTCGatcagaaaaaatatataaagttatat
aaaattaaaaaaactctgTAACTATTGTTGTCTAGTCAGATAAAAAAAGC
TCAGACTTCAAGACATTCACTTAGATGAGACAGTTAGCTCGCACTATGAA
AAACAACATATTGATCCATCAAGAATCTTAAGGTGTTTGCCTTTTAATAA
GAATGAACGAGTATTGTAAATGAAAATGTCCATTATATTAGCGAGTTAAT
TATAAATTTNAGACAGTTAGCTCGCACTATGAAAAACAACATATTGATCC
ATCAAGAATCTTAAGGTGTTTGCCTTTTTAATAAGAATGAACGAGTATTG
TAAATGAAAATCTCCATTATATTAGCGAGTTAATTATAAATTGTCCAGTA
TCAACGGAAATTTTGTTGTCTTTTCATCTTGCGttccattttcttttgtt
ttttctcatCCATCATTTCAGAGGGAGGTTCAGCAAAAAACCATGGTGCA
AGAACGTTAACCCATAATAAATAGAAAGCACGTGCAGGTACCTGAAAA
Run BLAST on NCBI

transcript from alignment at sc0004597:151..948

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043800 ID=TCONS_00043800|Name=TCONS_00043800|organism=Clytia hemisphaerica|type=transcript|length=798bp|location=Sequence derived from alignment at sc0004597:151..948 (Clytia hemisphaerica)
TTTTCAGGTACCTGCACGTGCTTTCTATTTATTATGGGTTAACGTTCTTG
CACCATGGTTTTTTGCTGAACCTCCCTCTGAAATGATGGatgagaaaaaa
caaaagaaaatggaaCGCAAGATGAAAAGACAACAAAATTTCCGTTGATA
CTGGACAATTTATAATTAACTCGCTAATATAATGGAGATTTTCATTTACA
ATACTCGTTCATTCTTATTAAAAAGGCAAACACCTTAAGATTCTTGATGG
ATCAATATGTTGTTTTTCATAGTGCGAGCTAACTGTCTNAAATTTATAAT
TAACTCGCTAATATAATGGACATTTTCATTTACAATACTCGTTCATTCTT
ATTAAAAGGCAAACACCTTAAGATTCTTGATGGATCAATATGTTGTTTTT
CATAGTGCGAGCTAACTGTCTCATCTAAGTGAATGTCTTGAAGTCTGAGC
TTTTTTTATCTGACTAGACAACAATAGTTAcagagtttttttaattttat
ataactttatatattttttctgatCGAAGTGATATTTAGGATATGTATTT
CCAATTATGAAACTTTTTAATGACCACAGGATGACCTTGATTGGGTTTAT
CCCCCAACTCAGTAACTTTACTACTCTTTCTAAAATGATATCAGaatttt
tttctgcaattcTAGCATTTAAATTGAAACATTAGGAGTTCTATTTgttt
tgtaaataaaattttagttaattttagttgatatttttggaatttattta
CAATAATTAATGGTTGGTAACGGTAAAACATATTGAAATTGAATTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027474XLOC_027474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043800-exon-sc0004597-1491911889:151..948TCONS_00043800-exon-sc0004597-1491911889:151..948Clytia hemisphaericaexon
TCONS_00043800-exon-sc0004597-1510915933:151..948TCONS_00043800-exon-sc0004597-1510915933:151..948Clytia hemisphaericaexon
TCONS_00043800-exon-sc0004597-1575043694:151..948TCONS_00043800-exon-sc0004597-1575043694:151..948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004597supercontigsc0004597:151..948 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.2023	20.9693	6.13799	2.93581	13.0778	7.25325	33.8413	35.3793	18.6282	17.4155	11.6558	9.50735	4.84722	3.20338	7.83244	7.74472	11.033	11.5402	3.71374	5.82924	12.754	11.0784	23.4123	22.1643	3.9449	6.1757	13.2974	11.9877	26.8757	20.9112
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top