TCONS_00043799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043799
Unique NameTCONS_00043799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043799 ID=TCONS_00043799|Name=TCONS_00043799|organism=Clytia hemisphaerica|type=transcript|length=628bp
ccttaaagtagttttataaagaaaattacTCGTGTACACCAgaattgaat
tgttttttaCCTCTAGATATGCAACTAAAAATGTTTTCCTTGGAAGAAAA
GAAACAGATTCGAAGCATGGGTCTCTCAAATATGtcACTGGCGTGTTGTC
TACTACTGGATGATGAAAAACACATTTTGATTGGCTCTTGGGATAACAAT
ATATATACCTACTCAATAGACTTTGCAAGAGCCATCAACTCAACACAAGC
ACACCACGACGCAGTGACAAAGTTACGTCATACGAAAGATTACGTCATCT
CGTCCTCGTGGGATTCTACGGTGAAGGTTTGGAAATTCAGTGCCGACAGC
TCCAGTAAATTTGAGTTTTTCGACGAGTTGGACCATGATACTGAGGTGAT
GTGTTGTGATGTACACACCGATGTCAATAATGGAACTGCCCACCTCGTTA
CCGGTACAAAAGATGGAACCATATTCATTTGGGATTTGTCAACATTTTCA
TTACAAAGTCAGCTGCAATTGCACACAGATGAAGTGACGGGTGTCCTGTA
CAGTAAAGGTAAAACAGCCTCGTTTTGATTGCATTACAGAGGCGGTTCTG
AGGAGGGCCAAATTTAATGAAGGGGATG
Run BLAST on NCBI

protein sequence of TCONS_00043799-protein

>TCONS_00043799-protein ID=TCONS_00043799-protein|Name=TCONS_00043799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MQLKMFSLEEKKQIRSMGLSNMSLACCLLLDDEKHILIGSWDNNIYTYSI
DFARAINSTQAHHDAVTKLRHTKDYVISSSWDSTVKVWKFSADSSSKFEF
FDELDHDTEVMCCDVHTDVNNGTAHLVTGTKDGTIFIWDLSTFSLQSQLQ
LHTDEVTGVLYSKGKTASF
Run BLAST on NCBI

transcript from alignment at sc0004595:132..5949-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043799 ID=TCONS_00043799|Name=TCONS_00043799|organism=Clytia hemisphaerica|type=transcript|length=5818bp|location=Sequence derived from alignment at sc0004595:132..5949- (Clytia hemisphaerica)
CCTTAAAGTAGTTTTATAAAGAAAATTACTCGTGTACACCAGAATTGAAT
TGTTTTTTACCTCTAGATATGCAACTAAAAATGTTTTCCTTGGAAGAAAA
GAAACAGATTCGAAGCATGGGTCTCTCAAATATGGTAACTGATTTAAAAA
ACTCTCATGTTTCCAATATGACTTTTAAGTTTTGTTCGTTTGAATGGGAG
ACAGAACTGATTGCTGCCCCAGTAGTTCACTTGACGGCGTTATTAGGGTC
TTTTCTTTCCAGCGTAAAAGCTTGTTTCAATTTTTTCCGGGCTCTATCGT
GTAGTTTAAGGTTTGGACGTGGTTAACTTGAGACCTTTAACCCCTTAACG
TTTCGACGATGTTCCATGGAATGAAATTCCGTCATTAGCCGTTTTGTTTG
GCACATTTATTAATCGAGATGAACACAAAAGAATGTGGCGTAATCANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTCAGGAATGGAGATATTTCAACTTCATTTCA
GCATTCCTCATCTATTCCTCGAACGTTCCTCAGGAATGGACATTTCTGAC
GTAATTTTTAGGTGTTCCTCACTCGTTCCTTGAACATTCCTCAGGAATGG
ACTTTCATGACGTTATTTTCAAGCATCCCTCACTCGTTCCTCAGGAATGG
ACATTTCTGACGTTATTTTTAAACGTTCCTCACTCGTCCCTCGAACGTTC
CTCAGAAATGGAGTTTCATGACGTTATTTTTAAGCGTTCCTCACTCGTTC
CTCACTCGTTCCTCGAACGTTCCTCAGGAATGGAGATATTTATTTTTCAC
TTTATTGTTCCTCATAGAGTCATCTATTCCTCGAACGTTCCTCAGGAATG
GACATTCATGTAAAGTGTTCATCACTTTTACGTATTTTATTATGCCCAAT
ACAATTATTGGTTAATTCTTTTGCAATTATTCAAATTATAATTATAATTA
GACACGTGAAAGATTTTTTGAAACGTCAAAATAAATCATCGTATTTGCAG
CCGAAAAAACGAGTTTAGAAACCAAAACTTCATGCTCAAACACAAATACA
CTCCTGTGCCACAGACCCACCGAGACCTCATCCCTACTGGAAAACTTTGC
AAAAATTCGTCCCTGGTGGGAAAATACCCTGGAATTTCATCCCCATTCGA
GATTCAATGTTTAAGAATTGCACTCCAAAACCATCCCCACTGGATTTTTG
TTCCACCTTGGAACAATAAAACTCCTATCCCCATTGAGGAAAAAGTTCCA
CCGGGGCTGTGAAACATCTATCTCATCAAAAAATTGAGTAATTTGGCTAA
GAACATTGATGTATGCTTATTAATANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTATTAATAGTGGTTCTTATAGATAAAGATGCGTTTTTT
GAGCTGAAAAATCTTTTTTGCAAAAATCTGCTTCAGCCATCTTTTACCTA
CGATAATACCCTCCTTGCATGCAAGAAAGTGAAAGAACTAATGATCCAAT
CGGGCTCTGTCACATTCGAGGGTTTGTTAGTCATGCACCTTTGTGCCAAA
ATCAGAAACTTTGAATGAGCCAATCTTGAGAAAAGTTGGTAACAAACGGA
CGCACGAATATTATAATTTAGGGTTATAATTTAGCTTCCGTTACTAATGT
GTTCTAAAGGACAAAAGTATTTCTCTAGCCCTCTCTCTTTCTCTGGAGGC
AGAGCCTGAAATTTTAAACGACATAAAAGTTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TAAAAGTTTTTGATATTGAATATCTTATCCATGAAAATGTATTAACAGCT
CCGAAAATGTCTTTTCCTGAGGAACAAACGAGGAACACTTTTAAATAACG
TCATGAATGCCCATTCTTCAGGAACGTTCGAGGAATAGATGAGGAACGAT
AAAGTGAAGAAGAAATATCTCCATTCCTGAGGAACGAGTGAGGAACGCTT
AAAAATAATGTCAGAAATGTCCATTCCTGAGGAACGTTCGAGGAATGAGT
GAGGAACGCTTAAAATTAACGTCATAAATGTCCATTCCTGAGGAACGTTC
GAGGAATAGATGAGGAATGCTGAAATGAAGTTGAAATATCTCCATTCCTG
AGGAACGTTCGAGGAACGAGTGAGGAACGCTTAAGAATAACGTCATAAAT
TTCCATTCCTCAGGAACGTTCGAGGAATAGATGAGGAATGCTAAAACAAA
GTTTTGAAATATCCATTCCTGAGGAACGTTCGAGGAATAGATGAGGAATG
CTAAAACAAAGTTTTGAAATATCCATTCCTGAGGAACGTTCGAGGAACGC
TGAGGAATAGAAGAGGAATAGTGAGGAATGGAGATGTCCGTGAGGAATGG
TGATCGGGTTAGTAGTGAATCAGGGGGTAAAAGATCTTTATCGAGAATTC
TAACACTATAGTTTATATATTTTTTTATAGTCACTGGCGTGTTGTCTACT
ACTGGATGATGAAAAACACATTTTGATTGGCTCTTGGGATAACAATATGT
AAGTCGAGTTTGCATGTCGATTGGCAGAACTGTTTATATCTATTTATATC
AAACCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTATATGCAATATTTCAGCCAATCAGAGACTTTCTCGACGTTTTTC
GTGACTTTTTTACATGAATCCGCTAATAGGAAACACGTGTATTCATAGAT
GAAACAGCCGCAGCAATTTACAAAACCGCAATAATTCTATACCTATAAGA
CCAAGTAAGAAAATGTTTAGCCTATATACGGCTAGGAGCGGCAAATCACT
GGACAAAAAATATACGACATAGCGTTTTAAATATTTACATATGACAGTGA
TTTGATATTCGGTTTATTGAGCACTCTCTGTAATGAGTTTGGATCCATGG
GTGAAAGCAGCCTGTTTTTATCGAAGATTATTCCCCCTTTACAAAAAAGC
CTAATCTGACTTTTTGTTTAATTTAGGCTCTGACAAAATTTTGACTCATT
TTAGATATACCTACTCAATAGACTTTGCAAGAGCCATCAACTCAACACAA
GCACACCACGACGCAGGTATAATGTTTGTCATTCTCCCGATTTTCAAAAT
GTTTTTACTTTGGGTATTTTGAAAGGCTTGAACTATTCTTAAAGGAAGAA
ATATCTTGGCGGAAATTTAATTTGGCGGATGTTTGAAAAAAGTTCTTTTC
AGCGGAGATTGGATTTGATGGATGGCTAGAAAAATAGTTGGAATTTAACT
TGGCAGTTGAAGGCTATTTTGACCGAATTTTGGGAAGTATTAAAATAATT
TCAGTTTGAATTTAGATTTCGGCTGAATCCGCCTAAATCTCTTCCTTCAA
TGAATAAATAGTTTTAAACCCTTTTTTCGTGTCTCTAGTTTTCTAATGCC
CCGATATTTTGCAATTATAAAACTATGGAAGGAAATCTTAAGTGCATGCG
TGGGCGGAATTTTTGGAATTGATTTTTTGTGATTCCTATTTTTATGTTTC
TCAGTGACAAAGTTACGTCATACGAAAGATTACGTCATCTCGTCCTCGTG
GGATTCTACGGTGAAGGTAAAATTTGTAAATCTTTTCTGTAGATGTATTA
TTTTTTCCTCATTTCCTTTCCCTCTTCTTTTTTTGCTTCGCCCATACCTC
GCACGCCCGAACGCACCCGACTTTCTAAATCCCTCACTCGTTTACTCTCT
CTGTATTATAATGCATTGCCTTGGTATTGACAATAAGATCTAATTGTGTT
ATTAAAGGTTCCAAACATCTCTTGTCAAGAGTCTGGATTGCATAAAGTCT
TTTCTTCCATAACAGGTTTGGAAATTCAGTGCCGACAGCTCCAGTAAATT
TGAGTTTTTCGTAAGTATAGTATCTCCGAACAAATTAGACAGTGCTTTCA
AAAAGAAATCAAACTTTCTTTCAAAATTTCTTTCTATCAGTGTTTTTTAT
TTTCTATTGGCCACTTCACGGTCGAAATGAATCATGGGTAATCCGCTTCC
CGTTGATTAGACGCAAAAACATTCCAAATTTTAGACCAACAGAAATTTGT
TATCAGAGCGCGATTGTCCTGATTACCCAAGAATCATTTCGACATGTTTT
TTATAAGCATACACAAATCTTAAAACTGGCTCGGATATGCAAAAATCGGN
GGTTGAATGGCCTACATGTTTTTTATAAGCATACACAAATCTTAAAACTG
GCTCGGATATGCAAAAATCGGGAGATTGACAAGGCCGAATAATTCTTGTT
GGATGCTTATGTCCAAAATAGTAGGGAAATTCCGAACATCCGTAAAATTC
TAATCCGAAAAAGAAGGCTCAATGCAATGCTTAGCATGCGCTTAAATTGT
TGCTATATATCTGAGCCTATAAATGCTTATAAGTACGATACTAATAATAA
AGCATTCCTCTTTTACATAGGACGAGTTGGACCATGATACTGAGGTGATG
TGTTGTGATGTACACACCGATGTCAATAATGGAACTGCCCACCTCGTTAC
CGGTACAAAAGATGGTAAGACCTTTCCTTCTCTATGGAAAAGTCGTACAT
ACACGTTTCTTTTTTATAAATAAGAACAAGATACAAGAATATAAGGCTTC
GATGGCCAAAACATTAAGTTGAGAGCATTTTAAGGCTTCGCGAACTCGAN
CTTTTTTATAAATAAGAACAAGATACAAGAATATAAGGCTTCGATGGCCA
AAACATTAAGTTGAGAGCATTTTAAGGCTTCGCGAACTCGAAAACAAAAT
TACTCACTAAATGGTGAAAATAATTTAAAAACTTAAGAATATCCGAAGGT
TTCGAAAATTTTGTCGAACCAGTAACCTTGCTTACCTCAACCAGATATTC
TCACTTTATGCTAAGGCTGTCATAATTGNAACCTTGCTTACCTCAACCAG
ATATTCTCACTTTATGCTAAGGCTGTCATAATTGAGATATTAATCTTTAC
ATTTTTCAGGAACCATATTCATTTGGGATTTGTCAACATTTTCATTACAA
AGTCAGCTGCAATGTAAGTATTGAAAATGTAACCTCAAATAAAGCTTGGT
GTAGGTTAGAAAATGGAATTGCGAATGGGTATTTTTATAATGTAATAGAT
TAAAAACAGTATTAAACAATTTGTAAACCATCTTTGTTAATAGTTTAAAA
AAAACTTTGCGAGTCTTCCTTCTACTGACTGATTGACCCTTGAATTTTAT
TACTTTCAGTGCACACAGATGAAGTGACGGGTGTCCTGTACAGTAAAGGT
AAAACAGCCTCGTTTTGATTGCATTACAGAGGCGGTTCTGAGGAGGGCCA
AATTTAATGAAGGGGATG

Coding sequence (CDS) from alignment at sc0004595:132..5949-

>TCONS_00043799 ID=TCONS_00043799|Name=TCONS_00043799|organism=Clytia hemisphaerica|type=CDS|length=4080bp|location=Sequence derived from alignment at sc0004595:132..5949- (Clytia hemisphaerica)
TGCACACAGATGAAGTGACGGGTGTCCTGTACAGTAAAGGTAAAACAGCC
TCGTTTTGAGAACCATATTCATTTGGGATTTGTCAACATTTTCATTACAA
AGTCAGCTGCAATGACGAGTTGGACCATGATACTGAGGTGATGTGTTGTG
ATGTACACACCGATGTCAATAATGGAACTGCCCACCTCGTTACCGGTACA
AAAGATGGTTTGGAAATTCAGTGCCGACAGCTCCAGTAAATTTGAGTTTT
TCTGACAAAGTTACGTCATACGAAAGATTACGTCATCTCGTCCTCGTGGG
ATTCTACGGTGAAGATATACCTACTCAATAGACTTTGCAAGAGCCATCAA
CTCAACACAAGCACACCACGACGCAGTCACTGGCGTGTTGTCTACTACTG
GATGATGAAAAACACATTTTGATTGGCTCTTGGGATAACAATATATGCAA
CTAAAAATGTTTTCCTTGGAAGAAAAGAAACAGATTCGAAGCATGGGTCT
CTCAAATATGTGCACACAGATGAAGTGACGGGTGTCCTGTACAGTAAAGG
TAAAACAGCCTCGTTTTGAGAACCATATTCATTTGGGATTTGTCAACATT
TTCATTACAAAGTCAGCTGCAATGACGAGTTGGACCATGATACTGAGGTG
ATGTGTTGTGATGTACACACCGATGTCAATAATGGAACTGCCCACCTCGT
TACCGGTACAAAAGATGGTTTGGAAATTCAGTGCCGACAGCTCCAGTAAA
TTTGAGTTTTTCTGACAAAGTTACGTCATACGAAAGATTACGTCATCTCG
TCCTCGTGGGATTCTACGGTGAAGATATACCTACTCAATAGACTTTGCAA
GAGCCATCAACTCAACACAAGCACACCACGACGCAGTCACTGGCGTGTTG
TCTACTACTGGATGATGAAAAACACATTTTGATTGGCTCTTGGGATAACA
ATATATGCAACTAAAAATGTTTTCCTTGGAAGAAAAGAAACAGATTCGAA
GCATGGGTCTCTCAAATATGTGCACACAGATGAAGTGACGGGTGTCCTGT
ACAGTAAAGGTAAAACAGCCTCGTTTTGAGAACCATATTCATTTGGGATT
TGTCAACATTTTCATTACAAAGTCAGCTGCAATGACGAGTTGGACCATGA
TACTGAGGTGATGTGTTGTGATGTACACACCGATGTCAATAATGGAACTG
CCCACCTCGTTACCGGTACAAAAGATGGTTTGGAAATTCAGTGCCGACAG
CTCCAGTAAATTTGAGTTTTTCTGACAAAGTTACGTCATACGAAAGATTA
CGTCATCTCGTCCTCGTGGGATTCTACGGTGAAGATATACCTACTCAATA
GACTTTGCAAGAGCCATCAACTCAACACAAGCACACCACGACGCAGTCAC
TGGCGTGTTGTCTACTACTGGATGATGAAAAACACATTTTGATTGGCTCT
TGGGATAACAATATATGCAACTAAAAATGTTTTCCTTGGAAGAAAAGAAA
CAGATTCGAAGCATGGGTCTCTCAAATATGTGCACACAGATGAAGTGACG
GGTGTCCTGTACAGTAAAGGTAAAACAGCCTCGTTTTGAGAACCATATTC
ATTTGGGATTTGTCAACATTTTCATTACAAAGTCAGCTGCAATGACGAGT
TGGACCATGATACTGAGGTGATGTGTTGTGATGTACACACCGATGTCAAT
AATGGAACTGCCCACCTCGTTACCGGTACAAAAGATGGTTTGGAAATTCA
GTGCCGACAGCTCCAGTAAATTTGAGTTTTTCTGACAAAGTTACGTCATA
CGAAAGATTACGTCATCTCGTCCTCGTGGGATTCTACGGTGAAGATATAC
CTACTCAATAGACTTTGCAAGAGCCATCAACTCAACACAAGCACACCACG
ACGCAGTCACTGGCGTGTTGTCTACTACTGGATGATGAAAAACACATTTT
GATTGGCTCTTGGGATAACAATATATGCAACTAAAAATGTTTTCCTTGGA
AGAAAAGAAACAGATTCGAAGCATGGGTCTCTCAAATATGTGCACACAGA
TGAAGTGACGGGTGTCCTGTACAGTAAAGGTAAAACAGCCTCGTTTTGAG
AACCATATTCATTTGGGATTTGTCAACATTTTCATTACAAAGTCAGCTGC
AATGACGAGTTGGACCATGATACTGAGGTGATGTGTTGTGATGTACACAC
CGATGTCAATAATGGAACTGCCCACCTCGTTACCGGTACAAAAGATGGTT
TGGAAATTCAGTGCCGACAGCTCCAGTAAATTTGAGTTTTTCTGACAAAG
TTACGTCATACGAAAGATTACGTCATCTCGTCCTCGTGGGATTCTACGGT
GAAGATATACCTACTCAATAGACTTTGCAAGAGCCATCAACTCAACACAA
GCACACCACGACGCAGTCACTGGCGTGTTGTCTACTACTGGATGATGAAA
AACACATTTTGATTGGCTCTTGGGATAACAATATATGCAACTAAAAATGT
TTTCCTTGGAAGAAAAGAAACAGATTCGAAGCATGGGTCTCTCAAATATG
TGCACACAGATGAAGTGACGGGTGTCCTGTACAGTAAAGGTAAAACAGCC
TCGTTTTGAGAACCATATTCATTTGGGATTTGTCAACATTTTCATTACAA
AGTCAGCTGCAATGACGAGTTGGACCATGATACTGAGGTGATGTGTTGTG
ATGTACACACCGATGTCAATAATGGAACTGCCCACCTCGTTACCGGTACA
AAAGATGGTTTGGAAATTCAGTGCCGACAGCTCCAGTAAATTTGAGTTTT
TCTGACAAAGTTACGTCATACGAAAGATTACGTCATCTCGTCCTCGTGGG
ATTCTACGGTGAAGATATACCTACTCAATAGACTTTGCAAGAGCCATCAA
CTCAACACAAGCACACCACGACGCAGTCACTGGCGTGTTGTCTACTACTG
GATGATGAAAAACACATTTTGATTGGCTCTTGGGATAACAATATATGCAA
CTAAAAATGTTTTCCTTGGAAGAAAAGAAACAGATTCGAAGCATGGGTCT
CTCAAATATGTGCACACAGATGAAGTGACGGGTGTCCTGTACAGTAAAGG
TAAAACAGCCTCGTTTTGAGAACCATATTCATTTGGGATTTGTCAACATT
TTCATTACAAAGTCAGCTGCAATGACGAGTTGGACCATGATACTGAGGTG
ATGTGTTGTGATGTACACACCGATGTCAATAATGGAACTGCCCACCTCGT
TACCGGTACAAAAGATGGTTTGGAAATTCAGTGCCGACAGCTCCAGTAAA
TTTGAGTTTTTCTGACAAAGTTACGTCATACGAAAGATTACGTCATCTCG
TCCTCGTGGGATTCTACGGTGAAGATATACCTACTCAATAGACTTTGCAA
GAGCCATCAACTCAACACAAGCACACCACGACGCAGTCACTGGCGTGTTG
TCTACTACTGGATGATGAAAAACACATTTTGATTGGCTCTTGGGATAACA
ATATATGCAACTAAAAATGTTTTCCTTGGAAGAAAAGAAACAGATTCGAA
GCATGGGTCTCTCAAATATGTGCACACAGATGAAGTGACGGGTGTCCTGT
ACAGTAAAGGTAAAACAGCCTCGTTTTGAGAACCATATTCATTTGGGATT
TGTCAACATTTTCATTACAAAGTCAGCTGCAATGACGAGTTGGACCATGA
TACTGAGGTGATGTGTTGTGATGTACACACCGATGTCAATAATGGAACTG
CCCACCTCGTTACCGGTACAAAAGATGGTTTGGAAATTCAGTGCCGACAG
CTCCAGTAAATTTGAGTTTTTCTGACAAAGTTACGTCATACGAAAGATTA
CGTCATCTCGTCCTCGTGGGATTCTACGGTGAAGATATACCTACTCAATA
GACTTTGCAAGAGCCATCAACTCAACACAAGCACACCACGACGCAGTCAC
TGGCGTGTTGTCTACTACTGGATGATGAAAAACACATTTTGATTGGCTCT
TGGGATAACAATATATGCAACTAAAAATGTTTTCCTTGGAAGAAAAGAAA
CAGATTCGAAGCATGGGTCTCTCAAATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027473XLOC_027473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043799-exon-sc0004595-1575043694:5816..5949TCONS_00043799-exon-sc0004595-1575043694:5816..5949Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1575043694:2952..3019TCONS_00043799-exon-sc0004595-1575043694:2952..3019Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1575043694:2384..2445TCONS_00043799-exon-sc0004595-1575043694:2384..2445Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1575043694:1884..1945TCONS_00043799-exon-sc0004595-1575043694:1884..1945Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1575043694:1590..1634TCONS_00043799-exon-sc0004595-1575043694:1590..1634Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1575043694:936..1029TCONS_00043799-exon-sc0004595-1575043694:936..1029Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1575043694:437..490TCONS_00043799-exon-sc0004595-1575043694:437..490Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1575043694:132..240TCONS_00043799-exon-sc0004595-1575043694:132..240Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1510915933:5816..5949TCONS_00043799-exon-sc0004595-1510915933:5816..5949Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1510915933:2952..3019TCONS_00043799-exon-sc0004595-1510915933:2952..3019Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1510915933:2384..2445TCONS_00043799-exon-sc0004595-1510915933:2384..2445Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1510915933:1884..1945TCONS_00043799-exon-sc0004595-1510915933:1884..1945Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1510915933:1590..1634TCONS_00043799-exon-sc0004595-1510915933:1590..1634Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1510915933:936..1029TCONS_00043799-exon-sc0004595-1510915933:936..1029Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1510915933:437..490TCONS_00043799-exon-sc0004595-1510915933:437..490Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1510915933:132..240TCONS_00043799-exon-sc0004595-1510915933:132..240Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1491911889:5816..5949TCONS_00043799-exon-sc0004595-1491911889:5816..5949Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1491911889:2952..3019TCONS_00043799-exon-sc0004595-1491911889:2952..3019Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1491911889:2384..2445TCONS_00043799-exon-sc0004595-1491911889:2384..2445Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1491911889:1884..1945TCONS_00043799-exon-sc0004595-1491911889:1884..1945Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1491911889:1590..1634TCONS_00043799-exon-sc0004595-1491911889:1590..1634Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1491911889:936..1029TCONS_00043799-exon-sc0004595-1491911889:936..1029Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1491911889:437..490TCONS_00043799-exon-sc0004595-1491911889:437..490Clytia hemisphaericaexon
TCONS_00043799-exon-sc0004595-1491911889:132..240TCONS_00043799-exon-sc0004595-1491911889:132..240Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043799-proteinTCONS_00043799-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004595supercontigsc0004595:132..5949 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.911	5.61469	1.05457	1.96968	4.79579	3.15808	8.70878	10.9047	8.91898	9.6335	8.14953	9.41736	7.99644	8.2459	10.3852	10.3194	8.6446	10.6195	8.82085	8.19432	6.87675	5.98971	11.7471	15.3578	12.3636	12.0079	9.17211	11.0278	9.49196	9.95805
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00043799 vs. Swiss-Prot (Human)
Match: FAN (Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 8.434e-27
Identity = 61/145 (42.07%), Postives = 83/145 (57.24%), Query Frame = 3 
Query:   66 DMQLKMFSLEEKKQIRSMGLSNMSLACCLLLDDEKHILIGSWDNNIYTYSIDFARAINSTQAHHDAVTKLRHTKDYVISSSWDSTVKVW-----KFSADSSSKFEFFDELDHDTEVMCCDVHTDVNNGTAHLVTGTKDGTIFIWD 485
            D  LKMFS E K   RS+  SNM+L+ CLLL  +  ++  SWDNN+Y YSI F R  ++   H DAV+K+    + + S+SWDSTVKVW     +        F+   EL+HD  V        +N  +  LV+GTK+GT+ IWD
Sbjct:  651 DSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDATVITSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSGVPAEMPGTKRHHFDLLAELEHDVSVDT----ISLNAASTLLVSGTKEGTVNIWD 791
The following BLAST results are available for this feature:
BLAST of TCONS_00043799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAN8.434e-2742.07Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2[more]
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