TCONS_00043799-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043799-protein
Unique NameTCONS_00043799-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length169

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043799-protein ID=TCONS_00043799-protein|Name=TCONS_00043799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MQLKMFSLEEKKQIRSMGLSNMSLACCLLLDDEKHILIGSWDNNIYTYSI
DFARAINSTQAHHDAVTKLRHTKDYVISSSWDSTVKVWKFSADSSSKFEF
FDELDHDTEVMCCDVHTDVNNGTAHLVTGTKDGTIFIWDLSTFSLQSQLQ
LHTDEVTGVLYSKGKTASF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027473XLOC_027473Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043799TCONS_00043799Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 36..50
score: 22.78
coord: 76..90
score: 36.17
coord: 126..140
score: 37.03
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 52..89
e-value: 0.23
score: 20.6
coord: 10..49
e-value: 17.0
score: 9.3
coord: 97..139
e-value: 0.023
score: 23.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 60..89
e-value: 0.0037
score: 18.0
coord: 106..139
e-value: 0.0033
score: 18.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 59..98
score: 10.241
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 126..148
score: 9.506
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 2..86
e-value: 4.4E-12
score: 45.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 107..167
e-value: 3.2E-10
score: 38.9
NoneNo IPR availableGENE3D1.10.10.670coord: 87..106
e-value: 0.0015
score: 17.8
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..26
score: 5.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 126..140
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..169
score: 19.143
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 4..165

Blast
[Close]
BLAST of TCONS_00043799-protein vs. Swiss-Prot (Human)
Match: FAN (Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.129e-31
Identity = 67/166 (40.36%), Postives = 94/166 (56.63%), Query Frame = 0 
Query:    3 LKMFSLEEKKQIRSMGLSNMSLACCLLLDDEKHILIGSWDNNIYTYSIDFARAINSTQAHHDAVTKLRHTKDYVISSSWDSTVKVW-----KFSADSSSKFEFFDELDHDTEVMCCDVHTDVNNGTAHLVTGTKDGTIFIWDLSTFSLQSQLQLHTDEVTGVLYSK 163
            LKMFS E K   RS+  SNM+L+ CLLL  +  ++  SWDNN+Y YSI F R  ++   H DAV+K+    + + S+SWDSTVKVW     +        F+   EL+HD  V        +N  +  LV+GTK+GT+ IWDL+T +L  Q+  H+  V    +S 
Sbjct:  654 LKMFSKESKMLQRSISFSNMALSSCLLLPGDATVITSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSGVPAEMPGTKRHHFDLLAELEHDVSVDT----ISLNAASTLLVSGTKEGTVNIWDLTTATLMHQIPCHSGIVCDTAFSP 815
The following BLAST results are available for this feature:
BLAST of TCONS_00043799-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAN1.129e-3140.36Protein FAN OS=Homo sapiens GN=NSMAF PE=1 SV=2[more]
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