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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043797 ID=TCONS_00043797|Name=TCONS_00043797|organism=Clytia hemisphaerica|type=transcript|length=1000bp
NACTGTTAGATTTGATTCTGATATGGGCCCCATGACAACTTCAACTGATT
TCTTCATTAGGAAACGACATCTTTGACAGTTTTTACGAATGAGCTTGATC
ATGGACCGATATTCGATAATGTAGGCCTTCTTTAGAAGTTATCGAATTGT
TGTTTCAACTCCAGTGTGTTGGCAAATGGGATGGTTCCAGTGAATGTCGA
GAGCGATACTGAAAGCGATAGGTGAGTGATTGCTGAGTACGGGTACGCAG
AAGGTATCGTTTGAGAGGTCTTTCATTGTCAAGGTGAATTTTCCAATGAT
TGATACTTCATCTGATGGAAGAATTCTACCAGTATAATGTAGAATACCAT
TCTTTTCTTGAGTGATCTTGTCGAATTTCTTTGGCTGAATGAATTGAAGT
ACTTCTCTTGTCCCAATTCTGAAGAAATATTGCTCTGAATCCTTAATTTC
CTCATCTGACAAGTTTGCTTGATAAAcccaattttgatttttaattctcT
TCTGGATGTTCCGACAAAAACGAATGACATATTCAATGATTCTGNTCTGA
CAACTTTTGTGAATGAGTGACGATTGGGATCAATTAGATAGTTCGAGAAA
GCATAGTAATCTTTGACGACATCATTGACTTTTGAGACGTGTGAATCGAC
TTCACCTGGGTTGAATTTGAGCTTGACTTCCTCTGGTTTGAAGATGGGAA
ATTCGCTATGCTTGAGTTGCAACCAAGGATGACCATTGATCCATGCTGAA
TCAGCATCAACGTCCTTGATGGATGCGCCTCTTCGAGTTCCAATATCAGC
AAGATTATTATCAGATTGGATGTAATACCATTGATTAGCAGTCGTAAAGC
GAAGGATTTCTATCACTCGATTCCTGACCCATTGATCCAAAGGCTTTTCG
TCGTTGGTAATCCAGAATAGACTTGCTTGATTATCGGTGAGTTTGATTGC
ATTCTTGTGATACTTGTTGAATGATCTACGAACAACTTCTCCTGTGTAGG Run BLAST on NCBI protein sequence of TCONS_00043797-protein >TCONS_00043797-protein ID=TCONS_00043797-protein|Name=TCONS_00043797-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
YTGEVVRRSFNKYHKNAIKLTDNQASLFWITNDEKPLDQWVRNRVIEILR
FTTANQWYYIQSDNNLADIGTRRGASIKDVDADSAWINGHPWLQLKHSEF
PIFKPEEVKLKFNPGEVDSHVSKVNDVVKDYYAFSNYLIDPNRHSFTKVV
RXESLNMSFVFVGTSRRELKIKIGFIKQTCQMRKLRIQSNISSELGQEKY
FNSFSQRNSTRSLKKRMVFYIILVEFFHQMKYQSLENSP Run BLAST on NCBI transcript from alignment at sc0004593:1..1000 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043797 ID=TCONS_00043797|Name=TCONS_00043797|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at sc0004593:1..1000 (Clytia hemisphaerica)
CCTACACAGGAGAAGTTGTTCGTAGATCATTCAACAAGTATCACAAGAAT
GCAATCAAACTCACCGATAATCAAGCAAGTCTATTCTGGATTACCAACGA
CGAAAAGCCTTTGGATCAATGGGTCAGGAATCGAGTGATAGAAATCCTTC
GCTTTACGACTGCTAATCAATGGTATTACATCCAATCTGATAATAATCTT
GCTGATATTGGAACTCGAAGAGGCGCATCCATCAAGGACGTTGATGCTGA
TTCAGCATGGATCAATGGTCATCCTTGGTTGCAACTCAAGCATAGCGAAT
TTCCCATCTTCAAACCAGAGGAAGTCAAGCTCAAATTCAACCCAGGTGAA
GTCGATTCACACGTCTCAAAAGTCAATGATGTCGTCAAAGATTACTATGC
TTTCTCGAACTATCTAATTGATCCCAATCGTCACTCATTCACAAAAGTTG
TCAGANCAGAATCATTGAATATGTCATTCGTTTTTGTCGGAACATCCAGA
AgagaattaaaaatcaaaattgggTTTATCAAGCAAACTTGTCAGATGAG
GAAATTAAGGATTCAGAGCAATATTTCTTCAGAATTGGGACAAGAGAAGT
ACTTCAATTCATTCAGCCAAAGAAATTCGACAAGATCACTCAAGAAAAGA
ATGGTATTCTACATTATACTGGTAGAATTCTTCCATCAGATGAAGTATCA
ATCATTGGAAAATTCACCTTGACAATGAAAGACCTCTCAAACGATACCTT
CTGCGTACCCGTACTCAGCAATCACTCACCTATCGCTTTCAGTATCGCTC
TCGACATTCACTGGAACCATCCCATTTGCCAACACACTGGAGTTGAAACA
ACAATTCGATAACTTCTAAAGAAGGCCTACATTATCGAATATCGGTCCAT
GATCAAGCTCATTCGTAAAAACTGTCAAAGATGTCGTTTCCTAATGAAGA
AATCAGTTGAAGTTGTCATGGGGCCCATATCAGAATCAAATCTAACAGTN
Coding sequence (CDS) from alignment at sc0004593:1..1000 >TCONS_00043797 ID=TCONS_00043797|Name=TCONS_00043797|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at sc0004593:1..1000 (Clytia hemisphaerica)
TACACAGGAGAAGTTGTTCGTAGATCATTCAACAAGTATCACAAGAATGC
AATCAAACTCACCGATAATCAAGCAAGTCTATTCTGGATTACCAACGACG
AAAAGCCTTTGGATCAATGGGTCAGGAATCGAGTGATAGAAATCCTTCGC
TTTACGACTGCTAATCAATGGTATTACATCCAATCTGATAATAATCTTGC
TGATATTGGAACTCGAAGAGGCGCATCCATCAAGGACGTTGATGCTGATT
CAGCATGGATCAATGGTCATCCTTGGTTGCAACTCAAGCATAGCGAATTT
CCCATCTTCAAACCAGAGGAAGTCAAGCTCAAATTCAACCCAGGTGAAGT
CGATTCACACGTCTCAAAAGTCAATGATGTCGTCAAAGATTACTATGCTT
TCTCGAACTATCTAATTGATCCCAATCGTCACTCATTCACAAAAGTTGTC
AGANCAGAATCATTGAATATGTCATTCGTTTTTGTCGGAACATCCAGAAg
agaattaaaaatcaaaattgggTTTATCAAGCAAACTTGTCAGATGAGGA
AATTAAGGATTCAGAGCAATATTTCTTCAGAATTGGGACAAGAGAAGTAC
TTCAATTCATTCAGCCAAAGAAATTCGACAAGATCACTCAAGAAAAGAAT
GGTATTCTACATTATACTGGTAGAATTCTTCCATCAGATGAAGTATCAAT
CATTGGAAAATTCACCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043797-exon-sc0004593-1491911889:1..1000 | TCONS_00043797-exon-sc0004593-1491911889:1..1000 | Clytia hemisphaerica | exon |
| TCONS_00043797-exon-sc0004593-1510915933:1..1000 | TCONS_00043797-exon-sc0004593-1510915933:1..1000 | Clytia hemisphaerica | exon |
| TCONS_00043797-exon-sc0004593-1575043694:1..1000 | TCONS_00043797-exon-sc0004593-1575043694:1..1000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004593 | supercontig | sc0004593:1..1000 . |
Blast
The following BLAST results are available for this feature:
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