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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043791 ID=TCONS_00043791|Name=TCONS_00043791|organism=Clytia hemisphaerica|type=transcript|length=1193bp
gaCTTTCTACCGCAGACTTCTTTCATTGAAAAAACCAAAAGAAATCTGGA
GGCTGATTCATCGAATTCTCAATCCAACAAAAAGTGTGATAAATATCCAA
CCATCCGTACTAAATGCACACTACCTATCCACGGCATCAAGAATCCTTGG
ATCGCAACCAACTTCCACTGAAGAAATCCAACATCTTCGAAATTTCGTCA
CTGAGGTTGATCAAGAATTTGAGTTTCAACCCGTCACTTATGATCAAGTT
GTCAAAGAGATAAAGAATCTTCGAAGTGACTGCTCTGCTTGGTATGACAA
TCTACCAGTATCGCTGATCGCCGACCATCTAGCGTCACCACTAACTCACA
TCATAAACACAGGGATCGCTCAAACCACTTTCCATCAGCAATGGAAAATC
GGTAAAGTAACACCGATTCCAAAAACTGAACAGTCCGTCACTCCTGACCA
ATTCAGACCCGTCACTGTTTTGCCTATCTTATCAAAACTTTAGAAACGTT
TAATGGCAAAGCAGATCGTTGAGTACATCGAAAGAAACCAGATATATATC
AACAAACCACGTCTGGTTTCCGCAAGCGTCATTCTACCGAAACGCTCCTA
ATGAAGATACGAGACGACATAATTGGTGCGATGAACAAAAGCGAAGTCAC
ACTAGCCGCTTTTCTTGATTATTCCAAAGCCTTCGATACTGTCGATTACA
AAACGCTACTAGTAAAACTACGAAAGATAGGCTTTTCGAACAGTGCTGCC
ATGCTTATGCTTTCGTACTTATGTAATCGTCGCCAATTCGTCCAGATTGA
TGACAACAAATCTGACTACGGAACTGTATCGTTtggggtacctcaaggct
cTATACTTGGACCAATTCTATTCAACCTTTATACCGTCGACCTACATGAT
AACGTTGATGGTGGGAGTAAAAACCAATATGCAGACGACACTACTATCTA
TGAACACTGTAAGACAGTAAACCTCCCAGCCTCGATCGTCAACTTAACAC
ATCGTTTAAACCAACTTAGAGAATGGTCAAGCACTAATAACCTGGCgttt
aacaacaaaaaaaatcaaaatcatgcTATCGTCAACACTGAGAATGTCAA
ACCTTCACGATTTCATGAACCCCGATCACGCAACCTTTCATATCAATCAC
ACAGACCAACTGATAGAACGAGTTATCGTTTATAAACTTCTTG Run BLAST on NCBI protein sequence of TCONS_00043791-protein >TCONS_00043791-protein ID=TCONS_00043791-protein|Name=TCONS_00043791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MKIRDDIIGAMNKSEVTLAAFLDYSKAFDTVDYKTLLVKLRKIGFSNSAA
MLMLSYLCNRRQFVQIDDNKSDYGTVSFGVPQGSILGPILFNLYTVDLHD
NVDGGSKNQYADDTTIYEHCKTVNLPASIVNLTHRLNQLREWSSTNNLAF
NNKKNQNHAIVNTENVKPSRFHEPRSRNLSYQSHRPTDRTSYRL Run BLAST on NCBI transcript from alignment at sc0004587:679..1871 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043791 ID=TCONS_00043791|Name=TCONS_00043791|organism=Clytia hemisphaerica|type=transcript|length=1193bp|location=Sequence derived from alignment at sc0004587:679..1871 (Clytia hemisphaerica)
CAAGAAGTTTATAAACGATAACTCGTTCTATCAGTTGGTCTGTGTGATTG
ATATGAAAGGTTGCGTGATCGGGGTTCATGAAATCGTGAAGGTTTGACAT
TCTCAGTGTTGACGATAgcatgattttgattttttttgttgttaaacGCC
AGGTTATTAGTGCTTGACCATTCTCTAAGTTGGTTTAAACGATGTGTTAA
GTTGACGATCGAGGCTGGGAGGTTTACTGTCTTACAGTGTTCATAGATAG
TAGTGTCGTCTGCATATTGGTTTTTACTCCCACCATCAACGTTATCATGT
AGGTCGACGGTATAAAGGTTGAATAGAATTGGTCCAAGTATAgagccttg
aggtaccccaAACGATACAGTTCCGTAGTCAGATTTGTTGTCATCAATCT
GGACGAATTGGCGACGATTACATAAGTACGAAAGCATAAGCATGGCAGCA
CTGTTCGAAAAGCCTATCTTTCGTAGTTTTACTAGTAGCGTTTTGTAATC
GACAGTATCGAAGGCTTTGGAATAATCAAGAAAAGCGGCTAGTGTGACTT
CGCTTTTGTTCATCGCACCAATTATGTCGTCTCGTATCTTCATTAGGAGC
GTTTCGGTAGAATGACGCTTGCGGAAACCAGACGTGGTTTGTTGATATAT
ATCTGGTTTCTTTCGATGTACTCAACGATCTGCTTTGCCATTAAACGTTT
CTAAAGTTTTGATAAGATAGGCAAAACAGTGACGGGTCTGAATTGGTCAG
GAGTGACGGACTGTTCAGTTTTTGGAATCGGTGTTACTTTACCGATTTTC
CATTGCTGATGGAAAGTGGTTTGAGCGATCCCTGTGTTTATGATGTGAGT
TAGTGGTGACGCTAGATGGTCGGCGATCAGCGATACTGGTAGATTGTCAT
ACCAAGCAGAGCAGTCACTTCGAAGATTCTTTATCTCTTTGACAACTTGA
TCATAAGTGACGGGTTGAAACTCAAATTCTTGATCAACCTCAGTGACGAA
ATTTCGAAGATGTTGGATTTCTTCAGTGGAAGTTGGTTGCGATCCAAGGA
TTCTTGATGCCGTGGATAGGTAGTGTGCATTTAGTACGGATGGTTGGATA
TTTATCACACTTTTTGTTGGATTGAGAATTCGATGAATCAGCCTCCAGAT
TTCTTTTGGTTTTTTCAATGAAAGAAGTCTGCGGTAGAAAGtc Coding sequence (CDS) from alignment at sc0004587:679..1871 >TCONS_00043791 ID=TCONS_00043791|Name=TCONS_00043791|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at sc0004587:679..1871 (Clytia hemisphaerica)
TTATAAACGATAACTCGTTCTATCAGTTGGTCTGTGTGATTGATATGAAA
GGTTGCGTGATCGGGGTTCATGAAATCGTGAAGGTTTGACATTCTCAGTG
TTGACGATAgcatgattttgattttttttgttgttaaacGCCAGGTTATT
AGTGCTTGACCATTCTCTAAGTTGGTTTAAACGATGTGTTAAGTTGACGA
TCGAGGCTGGGAGGTTTACTGTCTTACAGTGTTCATAGATAGTAGTGTCG
TCTGCATATTGGTTTTTACTCCCACCATCAACGTTATCATGTAGGTCGAC
GGTATAAAGGTTGAATAGAATTGGTCCAAGTATAgagccttgaggtaccc
caAACGATACAGTTCCGTAGTCAGATTTGTTGTCATCAATCTGGACGAAT
TGGCGACGATTACATAAGTACGAAAGCATAAGCATGGCAGCACTGTTCGA
AAAGCCTATCTTTCGTAGTTTTACTAGTAGCGTTTTGTAATCGACAGTAT
CGAAGGCTTTGGAATAATCAAGAAAAGCGGCTAGTGTGACTTCGCTTTTG
TTCATCGCACCAATTATGTCGTCTCGTATCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043791-exon-sc0004587-1491911889:679..1871 | TCONS_00043791-exon-sc0004587-1491911889:679..1871 | Clytia hemisphaerica | exon |
| TCONS_00043791-exon-sc0004587-1510915933:679..1871 | TCONS_00043791-exon-sc0004587-1510915933:679..1871 | Clytia hemisphaerica | exon |
| TCONS_00043791-exon-sc0004587-1575043694:679..1871 | TCONS_00043791-exon-sc0004587-1575043694:679..1871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004587 | supercontig | sc0004587:679..1871 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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