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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043782 ID=TCONS_00043782|Name=TCONS_00043782|organism=Clytia hemisphaerica|type=transcript|length=990bp
GCTGTTCTCCGATCACCTTCTTCAGATACTGATATCTTCATTCTCGCCGC
ATGTCTTTTAAATCCTTCAAAAATTTACCTTGGTTATGGTAAAGGTAAAC
AACGAAAGGGATTTTGGTTGAATAAGCTTGGTAAAGATGTTGAAAAGTAT
CGTACTTCCCTCATTGGTTTCCATGCCTTCAGTGGAAACGACTAtgtatc
ttcattttttaagaaaGGGAAATCAACCTGctggaaaaaaataaagaaga
atcGAAATTTTGTTGAAGCTTTCAAGGTATTGGGAACAGGATGGGATGTC
GATGATGCTACAATCACAACCTTGGAGCATTTCGTTTGTGCACTGTATGG
CTATCCACGCGAAACATCGATCAATGTCGTCCGGGCCAAACTCTTTGAAA
AGAAGTAGACCAAAACTGGGAAGATTATTGATATGGCACTTCTTCCCCCT
TGTCAGTCAGTTTTGATACTTCAAACAAAAAGGGCAAATTATGTTTCCAA
ATTATGGAAGTCGTCTTTAACAAGCTGGCTGGACCACGCTGACATTGCTG
ACAACGGTCTCCTGACNCTTCCCCCTTGTCAGTCAGTTTTGATACTTCAC
ACAAAAAGGGCAAATTATGTTTCCAAATTATGGAAGTCGTCTTTAACAAG
CTGGCTGGACCATGCTGACATTGCTGACAACGGTTGGTCTCCTGATGGTT
CAACAGTTTGGGTAGAGGATGTGTTTCCGAAAGAAGTCGAAGAGATCTTG
TGTGACGCAACATATATAGTTGACGAAACTGAAGATGGAGAAGACGAGAT
ATCTGACTTGGAAGAATCTGATAGTGACTCAGAACCTGATGATAACTTAG
ACAGTTCTGATGATGAATCCACTTGAATGTGAATGGCAACGGTTTTATTA
AACTTTCAATGACAATATGTGATGTTATAATTCAACTAATTTTTGTTATT
GACTTGAAGCACAAtacttttttattacttttcttccaac Run BLAST on NCBI protein sequence of TCONS_00043782-protein >TCONS_00043782-protein ID=TCONS_00043782-protein|Name=TCONS_00043782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MALLPPCQSVLILQTKRANYVSKLWKSSLTSWLDHADIADNGLLXLPPCQ
SVLILHTKRANYVSKLWKSSLTSWLDHADIADNGWSPDGSTVWVEDVFPK
EVEEILCDATYIVDETEDGEDEISDLEESDSDSEPDDNLDSSDDEST Run BLAST on NCBI transcript from alignment at sc0004580:267..1256 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043782 ID=TCONS_00043782|Name=TCONS_00043782|organism=Clytia hemisphaerica|type=transcript|length=990bp|location=Sequence derived from alignment at sc0004580:267..1256 (Clytia hemisphaerica)
gttggaagaaaagtaataaaaaagtaTTGTGCTTCAAGTCAATAACAAAA
ATTAGTTGAATTATAACATCACATATTGTCATTGAAAGTTTAATAAAACC
GTTGCCATTCACATTCAAGTGGATTCATCATCAGAACTGTCTAAGTTATC
ATCAGGTTCTGAGTCACTATCAGATTCTTCCAAGTCAGATATCTCGTCTT
CTCCATCTTCAGTTTCGTCAACTATATATGTTGCGTCACACAAGATCTCT
TCGACTTCTTTCGGAAACACATCCTCTACCCAAACTGTTGAACCATCAGG
AGACCAACCGTTGTCAGCAATGTCAGCATGGTCCAGCCAGCTTGTTAAAG
ACGACTTCCATAATTTGGAAACATAATTTGCCCTTTTTGTGTGAAGTATC
AAAACTGACTGACAAGGGGGAAGNGTCAGGAGACCGTTGTCAGCAATGTC
AGCGTGGTCCAGCCAGCTTGTTAAAGACGACTTCCATAATTTGGAAACAT
AATTTGCCCTTTTTGTTTGAAGTATCAAAACTGACTGACAAGGGGGAAGA
AGTGCCATATCAATAATCTTCCCAGTTTTGGTCTACTTCTTTTCAAAGAG
TTTGGCCCGGACGACATTGATCGATGTTTCGCGTGGATAGCCATACAGTG
CACAAACGAAATGCTCCAAGGTTGTGATTGTAGCATCATCGACATCCCAT
CCTGTTCCCAATACCTTGAAAGCTTCAACAAAATTTCgattcttctttat
ttttttccagCAGGTTGATTTCCCtttcttaaaaaatgaagatacaTAGT
CGTTTCCACTGAAGGCATGGAAACCAATGAGGGAAGTACGATACTTTTCA
ACATCTTTACCAAGCTTATTCAACCAAAATCCCTTTCGTTGTTTACCTTT
ACCATAACCAAGGTAAATTTTTGAAGGATTTAAAAGACATGCGGCGAGAA
TGAAGATATCAGTATCTGAAGAAGGTGATCGGAGAACAGC Coding sequence (CDS) from alignment at sc0004580:267..1256 >TCONS_00043782 ID=TCONS_00043782|Name=TCONS_00043782|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0004580:267..1256 (Clytia hemisphaerica)
TCAAGTGGATTCATCATCAGAACTGTCTAAGTTATCATCAGGTTCTGAGT
CACTATCAGATTCTTCCAAGTCAGATATCTCGTCTTCTCCATCTTCAGTT
TCGTCAACTATATATGTTGCGTCACACAAGATCTCTTCGACTTCTTTCGG
AAACACATCCTCTACCCAAACTGTTGAACCATCAGGAGACCAACCGTTGT
CAGCAATGTCAGCATGGTCCAGCCAGCTTGTTAAAGACGACTTCCATAAT
TTGGAAACATAATTTGCCCTTTTTGTGTGAAGTATCAAAACTGACTGACA
AGGGGGAAGNGTCAGGAGACCGTTGTCAGCAATGTCAGCGTGGTCCAGCC
AGCTTGTTAAAGACGACTTCCATAATTTGGAAACATAATTTGCCCTTTTT
GTTTGAAGTATCAAAACTGACTGACAAGGGGGAAGAAGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043782-exon-sc0004580-1491911889:267..1256 | TCONS_00043782-exon-sc0004580-1491911889:267..1256 | Clytia hemisphaerica | exon |
| TCONS_00043782-exon-sc0004580-1510915933:267..1256 | TCONS_00043782-exon-sc0004580-1510915933:267..1256 | Clytia hemisphaerica | exon |
| TCONS_00043782-exon-sc0004580-1575043694:267..1256 | TCONS_00043782-exon-sc0004580-1575043694:267..1256 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004580 | supercontig | sc0004580:267..1256 . |
Blast
The following BLAST results are available for this feature:
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