TCONS_00043760 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043760
Unique NameTCONS_00043760
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043760 ID=TCONS_00043760|Name=TCONS_00043760|organism=Clytia hemisphaerica|type=transcript|length=400bp
AAAGGAATCAGCATAACGGAAGACCTAACACCAACAGAAAGGTCTGTCCT
TAAAGAATGGACGGAAAAAGCAAAACATCTCGACTCCGAATCATCTGCAG
TAGCACATAGAGTCCGAGGTGATTCAAAAAACGGTTACTACATCAAGAAG
TTTCCAAAAAGCCAACGTCAGTAATATCTGTTACTGCAAACAAACaatta
gataaaaataaagaaacaacaaaaatagacGATACATTACCCGAACACAA
AACATCACCAACAACTGATAACATACCACAAACCAATGACAAAGCAAGCA
CAAACTTTGACATCACATTGATTCACCAACAAAACGGACATGAAAAACAA
GACGGACATGAACAACGAGACGTACAGGAACAGCGAGTCGGACAGGAGCA
Run BLAST on NCBI

transcript from alignment at sc0004541:37..558-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043760 ID=TCONS_00043760|Name=TCONS_00043760|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0004541:37..558- (Clytia hemisphaerica)
AAAGGAATCAGCATAACGGAAGACCTAACACCAACAGAAAGGTCTGTCCT
TAAAGAATGGACGGAAAAAGCAAAACATCTCGACTCCGAATCATCTGCAG
TAGCACATAGAGTCCGAGGTGATTCAAAAAACGGTTACTACATCAAGAAG
TTTCCAAAAAGCCAACGTCAGTAATATCTGTTACTGCAAACAAACAATTA
GATAAAAATAAAGAAACAACAAAAATAGACGATACATTACNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGATACATTACCCGAACACAAAACATCACCAACAACTGATAACATACCA
CAAACCAATGACAAAGCAAGCACAAACTTTGACATCACATTGATTCACCA
ACAAAACGGACATGAAAAACAAGACGGACATGAACAACGAGACGTACAGG
AACAGCGAGTCGGACAGGAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027436XLOC_027436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043760-exon-sc0004541-1575043694:324..558TCONS_00043760-exon-sc0004541-1575043694:324..558Clytia hemisphaericaexon
TCONS_00043760-exon-sc0004541-1575043694:37..201TCONS_00043760-exon-sc0004541-1575043694:37..201Clytia hemisphaericaexon
TCONS_00043760-exon-sc0004541-1510915933:324..558TCONS_00043760-exon-sc0004541-1510915933:324..558Clytia hemisphaericaexon
TCONS_00043760-exon-sc0004541-1510915933:37..201TCONS_00043760-exon-sc0004541-1510915933:37..201Clytia hemisphaericaexon
TCONS_00043760-exon-sc0004541-1491911889:324..558TCONS_00043760-exon-sc0004541-1491911889:324..558Clytia hemisphaericaexon
TCONS_00043760-exon-sc0004541-1491911889:37..201TCONS_00043760-exon-sc0004541-1491911889:37..201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004541supercontigsc0004541:37..558 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00083	1.38797	1.94154	1.37907	0.751472	1.15705	1.19404	0.447137	0.469577	0.775529	0.376374	0.494827	0.247069	0.385545	0.527367	0.452757	0.27888	0.50351	0.592361	0.413242	0.24256	0.455723	0.212974	0.387249	0	0.177985	4.71419	1.51675	0	0.21005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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