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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043754 ID=TCONS_00043754|Name=TCONS_00043754|organism=Clytia hemisphaerica|type=transcript|length=1896bp ATAACATAGATCTCAATAATATGAAAGCTACGCTGAAAGTTTGGCCAGAA GAAGTCGAAAATGCAGGACAAGTGACAGTTCTATGGGAGGGAATTCCCAA CCCAtcaaaaacagataaaattgGATATTACTGTCCTTATTATGACAACC CTACACATGGACTTGATTATATCGATGTCACAAAATCACCAACTTGGCAA GAAGGATATGGTTATTATACAGTCAAATTATACAACATGAGAGCTCCTTG TGCATTCAGATATTATAATGGTGGTAAAACTTTAGTTGCTATTAGCAACA AAGTGAGGTTTACAAATGGCGACATTTTTGNGGTGGTAAAACTTTAGTTG CTATTAGCAACAAAGTGAGGTTTACAAATGGCGACATTTTTGCTCCACTT CAAGTCCACTTGGCGATGACTGGAAAAGAAACAGAGATGAGAGTTATGTG GAATTCTGCTGAAGTCTCTGAAGGCATCCAAGTACGTTATGGTAAAACAA AAGACCTTGACAAAACACAAACGAAATATACCGTCAAAACTTACAAAGCT TCAGACATGTGCGAATCGCCTGCTAACACAACTGGATTTTGGGATGCTGG GTATATTTATGATGTTTTGTTGACTGACTTGGAACCCAACACGAGATATT ATTACTCCTGTGGTAGTAAAGAGTTTATGACGTCAGTGTACAACTTTACA ACTGTGATCAAAGGAGGAGATAAGACTCCTTTCAAATTTATCGCTTTTGG TGACATGGGAATCACCTCCCAAGCTGAAACAACCACCAAATCAGTTCGCC AAGAGATCGAGAATAACGATGTGAAATTTGTTTACCATGCCGGAGACATC TCGTACGCTCGTGGATATGCGTACCTGTGGGATCAATGGTTTCACGAGAT TCAACCAATGTCCGCTTTGGCTCCATACATGATTAACCTGGGTAACCATG AGTACCAACACATCTATGCATTTGATAAAGACCCTTCTCACCAACCGATG TGGCATCCATCATGGTATAACGGAGGTCAAGGATCTTTCGGTGAATGTGC TATTCCAATGGTTAATCGATTTCATATGCCTGATAACGGACTCGGTATAT TCTGGCATAGTTATAACGTTGGTTTCATTCACATGGTCTCCATCAGCTCT GAGCACGATTACCGAGAAGGTTCACTACAATATAGATGGTTGGAAAATGA TCTGAAGAATGTCGATCGCACCAAAACACCTTTTGTGATCGTTAGCGCCC ATCGACCGATGTATTGCAGTGAATATTACCCAGgaCCAGATTGGACTACC ATACTTGGCCAACAACAATATCTGGAAGATTTGTTATACAAATACCAAGT GGATGTCGGTCTTTGGGCTCACTATCACATTTACGAACGAACGTGTAAAG TATATCGCAACGAATGCCGGGAGGACGGGATAACTCATTTGGTGGTCGGT ACAGGAGGTGTGAACTTGGAGATCAATAAATGGTTCACAAAGGAATGGTC TAAGGTACGTGACGCTGATTTTGGTTACGGTCGATTCTCGGTGACAAACT CCACTCACCTTTTGTTCGAATTCGTGAAACTTAACACTGGGAAAGTTGGC GACTCGGTTTGGATCACcaaataatttttgattaaCTGATTTCTGACTAC Agcgccgtaggaagcattttcatattgggggggctgaagtttagtgacac cgcgagggtcaaccatggtttggcccgaggggggaaattttaaaaattga gctctagattgcttaaaaatacactcaaaacatgcacataaaagacaatt atgacaaattaaaaaagaaaaactttgcattcattttgcaaaataaccat ttttgaaaaaattattgggggggcataGCTACCCtccccttgcccc Run BLAST on NCBI transcript from alignment at sc0004531:12..6532- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043754 ID=TCONS_00043754|Name=TCONS_00043754|organism=Clytia hemisphaerica|type=transcript|length=6521bp|location=Sequence derived from alignment at sc0004531:12..6532- (Clytia hemisphaerica) ATAACATAGATCTCAATAATATGAAAGCTACGCTGAAAGTTTGGCCAGAA
GAAGTCGAAAATGCAGGACAAGTGACAGTTCTATGGGAGGGAATTCCCAA
CCCATCAAAAACAGATAAAATTGGATATTACTGTCCTTATTATGACAACC
CTACACATGGACTTGATTATATCGATGTCACAAAATCACCAACTTGGCAA
GAAGGATATGGTTATTATACAGTCAAATTATACAACATGAGAGCTCCTTG
TGCATTCAGATATTATAATGGTGGTAAAACTTTAGTTGCTATTAGCAACA
AAGTGAGGTTTACAAATGGCGACATTTTTGNGGTGGTAAAACTTTAGTTG
CTATTAGCAACAAAGTGAGGTTTACAAATGGCGACATTTTTGCTCCACTT
CAAGTCCACTTGGCGATGACTGGAAAAGAAACAGAGATGAGAGTTATGTG
GAATTCTGCTGAAGGTACTTAAGTCCTTAAAAATAGCAATTTGTTTGCCT
AGTCACTTAAGTTGTTATGCTTGAAGGATACAGAACTCAGTATCCTTTAA
AAAGGAAAAGAACAGGGCCTGAAAGTAATGGTTGGTAGATAGCGATATAT
TTATAAAGCCCGAAGGGCTAGATGACGAGATGTCGTGCTTTGGCTGAAAA
GTGTGCCGAAGTTAGGTAGGAAATCGTACCTAGGTCGGAAATCCTACCTA
GGTCGCAAATCCTACCTAGTTCACGTGACCTTACAATAGAATTTCAGTGC
TTGACCAATAAGAAGTTTCACGGGTTTTCGAAAACAATAGCAGTAATATT
TTTTGCGATATTCACATTTTTTTGCTTTGAAGAGTTTAAAGCACGGCATC
TAGCACTTGGGGCTTTACAGAAATCTGTGAGACAGGGCTTTTAGATAATC
TTTTGATTGTTTTGACGGAAGGGGCCCAGGGGGAGGAGACTCGGCTATTT
ATGAACTGAACTGAAGGGAACATTGAAGCATTCCAACCGGCAACTCCTTG
TTTGTGGAGCTAAAGCCTGAGACCAGTTGTTCATTTCTCCTCAAAAAACC
CTATAAAGGTGTTCTTGTAAGTTTGTCTCAAATTAAGGATATTTTCCTTT
TCATTTATCAGTCTCTGAAGGCATCCAAGTACGTTATGGTAAAACAAAAG
ACCTTGACAAAACACAAACGAAATATACCGTCAAAACTTACAAAGCTTCA
GACATGTGCGAATCGCCTGCTAACACAACTGGATTTTGGGATGCTGGGTA
TATTTATGATGTTTTGTTGACTGACTTGGAACCCAACACGAGATATTATT
ACTCCTGTGGTAGTAAAGAGGTAAAAATAAATACCAAGAAAAGACCTTAT
TGAAGCTCAAGCTAGAACAATAGCCACTTGAAAATTCCACTTAATAATTT
CGTCCCCTAATTTTAGTGTCAAAGGTTTTTCTTCAATCTTTAATAACGAC
AATAATGTGGAGTCTTTTAATGAAACAGCAGAAGGAAGGTCTGTTGGAAA
GAACGCCCTTTTAAGCATTTTGTTTCGGTTGATGAACACCAGATCTATTT
TCGACATCTTTAAGCAATTTTAAAAGTAAACCTTATATACGTGTATTTCG
ATCACAATCTTAGAATTTCCTTGATCCAAATAAACATCAAAAGTTAAACT
TTCCTCTTTTCAATACAAAGGAATTCAGTATTTATATATCTTGAGAAAAA
GTAAACTCGGAGTGTGTTGAGCCCTTTCGTAATACTCTTGTTGCCGGATC
TTGAAAAAAATGATCCATTTTTTGTCTCCACATTTCAGTTTATGACGTCA
GTGTACAACTTTACAACTGTGATCAAAGGAGGAGATAAGACTCCTTTCAA
ATTTATCGCTTTTGGTGACATGGGAATCACCTCCCAAGCTGAAACAACCA
CCAAATCAGTTCGCCAAGAGATCGAGAATAACGATGTGAAATTTGTTTAC
CATGCCGGAGACATCTCGTACGCTCGTGGATATGTAAGAATCTTTTGTCA
TTGAAAATTTAAACTTCATGTAAACTTTATGTAAAAACACTTAATTTACA
TGAAAATCTTTAAACTTTCAGCGTACATTAATCTTCTATCTCGGACAGAT
TTCCGTCTCAAGGCCATGGCAAACCAGTCCAACATTTCATGCAACTTTAT
ATCCAGTGCTACATGGAGTCTTTCATCTACAAATGTTGGATGAAATGTTT
GATTGCGAACAAACTTCATCGAACACGTTATTTTCTACTTTTTTTGAATT
TTCCTTTTTTTTTGAAAATTTTACATTTCCACCAACTGTTCAAGAATTTC
ATCCATCATTCGAAAAATAGCATGCTAGATGAAATGTTGCACCGGTTTGC
CCTGGTCTTTATTGATTACTATCTGAGTGAAAAAAACTTTGCTTTCATCT
ACCGACTATTTGAACTATTTTACTACTGACCTTTTTGTGTATGGTACAAA
TATTTCNGCTCCACTTCAAGTCCACTTGGCGATGACTGGAAAAGAAACAG
AGATGAGAGTTATGTGGAATTCTGCTGAAGGTACTTAAGTCCTTAAAAAA
GCAATTTGGGTGCCTAGTTACTTAAATTGTTATGCTTGAAGGATAATTAT
AATTATAAATCACACAGAACTCAGTATCCTTTAAAAAGGAAAAGAACAGG
GCCTGAAAGTAATGGTAGGTAGATAGTCATATATTTATAAAGCCCGAAAG
GCTAGATGTCGTGCTTTGGCTGAAAAGTGTGTCGAAGTTAGGTAGGAAAT
CGTACCTAGGTCGGAAATCCTACCTAGGTCACGTGACATTACAATAGAAT
TTCAGTGCTTGACCAATAAGAAGTTTCACGGGTTTTCGAAAACAATAGCA
GTAATATTTTTTGCGATATTCACTTTTTTTTGCTTTGAAGAGTTTAAAGC
ACGACATCTAGCACTTGGGGCTTTACAGAAATCTGTGAGACAGGGCTTTT
AGACAATCTTTTGATTGTTTTGACGGAAGGGACTCGGCTATTTATGAACT
GAACTGAAGGGAACATTGAAGCATTCCAACCGGCAACTCCTTATTTGTGG
AGCTAAAGCCTGAGACCAGTTGTTCATTTCTCCTCAAAGCACCCTTTAAA
GGTGTTCTTGTAAGTTTGTTTCAAATTAAGGATATTTTTCTTTTCATTTA
TCAGTCTCTGAAGGCATCCAAGTACGTTATGGTAAAACTAAAGACCTTGA
CAAAACACAAACGAAATACACCGTCAAAACTTACAAAGCTTCAGACATGT
GCGAATCGCCTGCTAACACAACTGGATTTTGGGATGCTGGATATATTTAT
GATGTTTTGTTGACTGACTTGGAACCCAACACGAGATATTATTACTCCTG
TGGTAGTAAAGAGGTAAAAATAAATGCCAAGAAAAGACCTTATTGAAGCT
CAAGCTAGAACAATAGCCACTTGAAAATTCCACTTAAAAATTTCGTCCCC
TAATTTTAGTGTAAAAAGTTTTTCTTCAAACTTTAATAACGACAATAATG
TGGAGTCTTTTAATGAAACAGCAGAAGGAAGGTCTGTTGCAAAGAACGCC
CTTTTAAGCATTTTGTTTCGGTTGATGAACACCAGATCTATTTTCGACAT
CTTTAAGCAATTTTAAAAGTAAACCTTATATATTTCGATCACAATCTTAA
AATTTCCTTGATCCAAATAAACATCAAAAGTTAAACTTTCCTCTTTTCAA
TGCAAAGGAATTCAATATTTATAATTCTTGAGAAAAAGTAAACTCGGAGT
GTTGAGCCCTTTTGTGATACAGCCTTGGCCGTTTTTTGAAACTGATTCAC
TTTTTCACCCACATTTCAGTTTATGACGTCGGTGTACAACTTTACAACTG
TGATCAAAGGAGGAGACATGACTCCTTTCAAATTTATCGCTTTTGGTGAC
ATGGGAATCACCTCTCAAGCTGAAACAACCACTAAATCAGTTCGCCAAGA
GATCGAGAATAACGATGTGAAATTTGTTTACCATGCCGGCGACATCTCGT
ACGCTCGTGGATATGTAAGAATCATTTGTTATTGGGATAGTTTAGACTCG
AAGTTTTTATTGATAATTTAGTTCAAACTTTTTCCACTTCGGAGGGATTT
CCATCTTAGCAAGGCCTTCTCCATTATCGGATTACAGTAGAGTCTCCTTA
ACTCGACCACCTGGTTTATAAGGCATTGTTAACTGAGGGTACCAGCAAAT
TTGGTCAAGTTAAGCATATTTGCATAAAAGATTTCGAGTTGCAGAGGCTC
CACCCTCACTGCAACATCTTTATTTTGACAACTGACATTTACGCGTGTGG
TACAAATGTTTACTCTCCTTTCTCCTAAGGCGTACCTGTGGGATCAATGG
TTTCACGAGATTCAACCAATGTCCGCTTTGGCTCCATACATGATTAACCT
GGGTAACCATGAGTACCAACACATCTATGCATTTGATAAAGACCCTTCTC
ACCAACCGATGTGGCATCCATCATGGTATAACGGAGGTCAAGGATCTTTC
GGTGAATGTGCTATTCCAATGGTTAATCGATTTCATATGCCTGATAACGG
ACTCGGTATATTCTGGTATGTGTTTCCTGAAACATTTATGTAATCTTAGT
ATTACCCCAGCTGGCACACAACGTTTTTTTGACGTTTATCTAACGTTCAC
AACGTCCATATAACGTTAGATGAACGTTGAAACAACGTCGTGTGCCAGCT
GGGACTATTTATAAAAAGAACATCGAGGATTATGAAAAGTTTCAAAATGT
AAATAAGAGATTGGATCTTTTTTCCATTCAGTTTGATTTTGGAAATTTTT
GATGATTTTGATTATTGATATCAGTACAATAGCNCCGATGTGGCATCCAT
CATGGTATAACGGAGGTCAAGGATCTTTCGGTGAATGTGCTATTCCAATG
GTTAATCGATTTCATATGCCTGATAATGGACTCGGTATATTCTGGTATGT
GTTTCCTGAAACATGTTTATGTAATCTTAGTATTTATAAAAGAACATCGA
GGATTATGAAAAGTTTCAAAATGTAAATAAGAGATTGGATCTTTTTTCCA
TTCAATTTGATTTTGGAAATTTTTGATGATTTTGATTATTGATATCTATA
CATACACTATTTCATAGTGATTTTTCTCTTATTTGTTTTCTTAGGCATAG
TTATAACGTTGGTTTCATTCACATGGTCTCCATCAGCTCTGAGCACGATT
ACCGAGAAGGTTCACTACAATATAGATGGTTGGAAAATGATCTGAAGAAT
GTCGATCGCACCAAAACACCTTTTGTGATCGTTAGCGCCCATCGACCGAT
GTATTGCAGTGAATATTACCCAGGTGAGGTCAAAATTACGGAAATTGCTA
TAAAATCTTTTCTTTTGTGATTTTCAACTTCTCAAAAGTTACTGGAAAGT
GCCTAAGGGGTTGAAAATATGTGTGTATTCTGCAGGAATGTTATTTTTCG
GTAAAAGCTTACTTTAGGCGTACAAACTTTCGCGAGCAGAAACTTTCGCG
AGGTCGAAAAATCCCGAAATCTACGACATTTACTTTTGCGAATTTGACAA
AAAAAATATTTTTTTTCGCCAATTATGTATATTTTAAGTAGAAAATCAAG
TTTTCGGTACATAAAACCAGTGTTTTCATCGTTCAAATGTACTCAAACCG
CAATTGATTGACTTTTGCATAATATCCACGCTAAATTTGATCCTTGTTAT
CGTCAAAGAGTAAAGTTTGAGTAAATTTTCTTTACAGATTTCTTTTCGCG
AGCATAAACTTTCGCGAATTGCCCCCTCAAGAAATTTCAAAGACATTTAC
TTTCGCGAAAAGGGCTAGAATTCGCGAAAATCGCGAAAGTTTCTGCTCAC
GAAAGTTTGTACGCCTAAAGTATTTCATGGAGATGCTGAAGTGTTTTTTC
TTTTGTAGGACCAGATTGGACTACCATACTTGGCCAACAACAATATCTGG
AAGATTTGTTATACAAATACCAAGTGGATGTCGGTCTTTGGGCTCACTAT
CACATTTACGAACGAACGTGTAAAGTATATCGCAACGAATGCCGGGAGGA
CGGGATAACTCATTTGGTGGTCGGTACAGGAGGTGTGAACTTGGAGATCA
ATAAATGGTTCACAAAGGAATGGTCTAAGGTACGTGACGCTGATTTTGGT
TACGGTCGATTCTCGGTGACAAACTCCACTCACCTTTTGTTCGAATTCGT
GAAACTTAACACTGGGAAAGTTGGCGACTCGGTTTGGATCACCAAATAAT
TTTTGATTAACTGATTTCTGACTACAGCGCCGTAGGAAGCATTTTCATAT
TGGGGGGGCTGAAGTTTAGTGACACCGCGAGGGTCAACCATGGTTTGGCC
CGAGGGGGGAAATTTTAAAAATTGAGCTCTAGATTGCTTAAAAATACACT
CAAAACATGCACATAAAAGACAATTATGACAAATTAAAAAAGAAAAACTT
TGCATTCATTTTGCAAAATAACCATTTTTGAAAAAATTATTGGGGGGGCA
TAGCTACCCTCCCCTTGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00043754-exon-sc0004531-1575043694:6069..6532 | TCONS_00043754-exon-sc0004531-1575043694:6069..6532 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1575043694:5213..5421 | TCONS_00043754-exon-sc0004531-1575043694:5213..5421 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1575043694:4550..4744 | TCONS_00043754-exon-sc0004531-1575043694:4550..4744 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1575043694:1968..2203 | TCONS_00043754-exon-sc0004531-1575043694:1968..2203 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1575043694:1210..1388 | TCONS_00043754-exon-sc0004531-1575043694:1210..1388 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1575043694:12..624 | TCONS_00043754-exon-sc0004531-1575043694:12..624 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1510915933:6069..6532 | TCONS_00043754-exon-sc0004531-1510915933:6069..6532 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1510915933:5213..5421 | TCONS_00043754-exon-sc0004531-1510915933:5213..5421 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1510915933:4550..4744 | TCONS_00043754-exon-sc0004531-1510915933:4550..4744 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1510915933:1968..2203 | TCONS_00043754-exon-sc0004531-1510915933:1968..2203 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1510915933:1210..1388 | TCONS_00043754-exon-sc0004531-1510915933:1210..1388 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1510915933:12..624 | TCONS_00043754-exon-sc0004531-1510915933:12..624 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1491911889:6069..6532 | TCONS_00043754-exon-sc0004531-1491911889:6069..6532 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1491911889:5213..5421 | TCONS_00043754-exon-sc0004531-1491911889:5213..5421 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1491911889:4550..4744 | TCONS_00043754-exon-sc0004531-1491911889:4550..4744 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1491911889:1968..2203 | TCONS_00043754-exon-sc0004531-1491911889:1968..2203 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1491911889:1210..1388 | TCONS_00043754-exon-sc0004531-1491911889:1210..1388 | Clytia hemisphaerica | exon |
| TCONS_00043754-exon-sc0004531-1491911889:12..624 | TCONS_00043754-exon-sc0004531-1491911889:12..624 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0004531 | supercontig | sc0004531:12..6532 - |
Blast
BLAST of TCONS_00043754 vs. Swiss-Prot (Human)
Match: ACP7 (Acid phosphatase type 7 OS=Homo sapiens GN=ACP7 PE=2 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 6.917e-41 Identity = 110/370 (29.73%), Postives = 172/370 (46.49%), Query Frame = 2
Query: 602 YIYDVLLTDLEPNTRYYYSCGSKEFMTSVYNFTTVIKGGDKTPFKFIAFGDMGITSQAETTTKSVRQEIENNDVKFVYHAGDISYA--RGYAYLWDQWFHEIQPMSALAPYMINLGNHEYQHIYAFDKDPSHQPMWHPSWYNGGQGSFGECAIPMVNRFHMPDNGLGIFWHSYNVGFIHMVSISSE------HDYREGSLQYRWLENDLK--NVDRTKTPFVIVSAHRPMYCSE-------YYPGPDWTTILGQQQYLEDLLYKYQVDVGLWAHYHIYERTCKVYR----NECRE------DGITHLVVGTGGVNLEINKW--FTKEWSKVRDADFGYGRFSVTNSTHLLFEFVKLNT-GKVGDSVWITK 1621
YI+ V L L P +Y Y CGS + + + F + G +P + FGD+G + +R++ + V H GD +Y + A + D++ I+P++A PYM GNHE ++ ++ K RF MP + G+ W+S+++G H++S S+E + Q+RWLE+DL+ N +R P++I HRPMYCS + + G+ LEDL YKY VD+ LWAH H YER +Y N RE G H++ G+ G + + F + WS VR ++GY R + N TH+ + V + GK+ D VW+ +
Sbjct: 92 YIHRVTLRKLLPGVQYVYRCGSAQGWSRRFRFRALKNGAHWSP-RLAVFGDLG--ADNPKAVPRLRRDTQQGMYDAVLHVGDFAYNLDQDNARVGDRFMRLIEPVAASLPYMTCPGNHEERYNFSNYK----------------------------ARFSMPGDNEGL-WYSWDLGPAHIISFSTEVYFFLHYGRHLVQRQFRWLESDLQKANKNRAARPWIITMGHRPMYCSNADLDDCTRHESKVRKGLQGKLYGLEDLFYKYGVDLQLWAHEHSYERLWPIYNYQVFNGSREMPYTNPRGPVHIITGSAGCEERLTPFAVFPRPWSAVRVKEYGYTRLHILNGTHIHIQQVSDDQDGKIVDDVWVVR 429
The following BLAST results are available for this feature:
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