TCONS_00043737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043737
Unique NameTCONS_00043737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043737 ID=TCONS_00043737|Name=TCONS_00043737|organism=Clytia hemisphaerica|type=transcript|length=486bp
TCACAGTGTTGGTATTGAGGTCGAGTTTGACTGATTCATTAATCAGCTCC
TGCTCTGCTTCCTCCCTGATGCTGATATCTTGTTGATGGTCAGAACTTTT
GCAGGTCGAGCAGGATCTGCACTTGATGCATCTATATGTAATCTCTGATC
CTGTTGATTCTGAGAGCTCGAAACGCCTGTCTTTGCTGAGTAAGGATAGT
ATCTTAACATCTGGGTCGACTTGGACTCCTCCTCTTGCGATGAGGTATTG
ATGATTGAAGAAACTCAACATCTGGTTATGACTGAAGAATGATTGGTGTA
TCTTTGTGAAGATGTGATGTGGGCCTCCGATCACTCCACGTCCTCCATTG
GCGTTTTTGAATGCGGATTGATAGATACCAAGTCCTGATGGTAGCTGGTA
AATGAGCTTGGGATGATAACGTAAATACTTGACACCCAACATCAGGTGAG
TGTCTCCTCCAACGACGTGAGCTGGTTTAGGAAGTG
Run BLAST on NCBI

protein sequence of TCONS_00043737-protein

>TCONS_00043737-protein ID=TCONS_00043737-protein|Name=TCONS_00043737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
LPKPAHVVGGDTHLMLGVKYLRYHPKLIYQLPSGLGIYQSAFKNANGGRG
VIGGPHHIFTKIHQSFFSHNQMLSFFNHQYLIARGGVQVDPDVKILSLLS
KDRRFELSESTGSEITYRCIKCRSCSTCKSSDHQQDISIREEAEQELINE
SVKLDLNTNTV
Run BLAST on NCBI

transcript from alignment at sc0004518:6041..6526

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043737 ID=TCONS_00043737|Name=TCONS_00043737|organism=Clytia hemisphaerica|type=transcript|length=486bp|location=Sequence derived from alignment at sc0004518:6041..6526 (Clytia hemisphaerica)
CACTTCCTAAACCAGCTCACGTCGTTGGAGGAGACACTCACCTGATGTTG
GGTGTCAAGTATTTACGTTATCATCCCAAGCTCATTTACCAGCTACCATC
AGGACTTGGTATCTATCAATCCGCATTCAAAAACGCCAATGGAGGACGTG
GAGTGATCGGAGGCCCACATCACATCTTCACAAAGATACACCAATCATTC
TTCAGTCATAACCAGATGTTGAGTTTCTTCAATCATCAATACCTCATCGC
AAGAGGAGGAGTCCAAGTCGACCCAGATGTTAAGATACTATCCTTACTCA
GCAAAGACAGGCGTTTCGAGCTCTCAGAATCAACAGGATCAGAGATTACA
TATAGATGCATCAAGTGCAGATCCTGCTCGACCTGCAAAAGTTCTGACCA
TCAACAAGATATCAGCATCAGGGAGGAAGCAGAGCAGGAGCTGATTAATG
AATCAGTCAAACTCGACCTCAATACCAACACTGTGA

Coding sequence (CDS) from alignment at sc0004518:6041..6526

>TCONS_00043737 ID=TCONS_00043737|Name=TCONS_00043737|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0004518:6041..6526 (Clytia hemisphaerica)
CTTCCTAAACCAGCTCACGTCGTTGGAGGAGACACTCACCTGATGTTGGG
TGTCAAGTATTTACGTTATCATCCCAAGCTCATTTACCAGCTACCATCAG
GACTTGGTATCTATCAATCCGCATTCAAAAACGCCAATGGAGGACGTGGA
GTGATCGGAGGCCCACATCACATCTTCACAAAGATACACCAATCATTCTT
CAGTCATAACCAGATGTTGAGTTTCTTCAATCATCAATACCTCATCGCAA
GAGGAGGAGTCCAAGTCGACCCAGATGTTAAGATACTATCCTTACTCAGC
AAAGACAGGCGTTTCGAGCTCTCAGAATCAACAGGATCAGAGATTACATA
TAGATGCATCAAGTGCAGATCCTGCTCGACCTGCAAAAGTTCTGACCATC
AACAAGATATCAGCATCAGGGAGGAAGCAGAGCAGGAGCTGATTAATGAA
TCAGTCAAACTCGACCTCAATACCAACACTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027419XLOC_027419Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043737-proteinTCONS_00043737-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043737-exon-sc0004518-1491911889:6041..6526TCONS_00043737-exon-sc0004518-1491911889:6041..6526Clytia hemisphaericaexon
TCONS_00043737-exon-sc0004518-1510915933:6041..6526TCONS_00043737-exon-sc0004518-1510915933:6041..6526Clytia hemisphaericaexon
TCONS_00043737-exon-sc0004518-1575043694:6041..6526TCONS_00043737-exon-sc0004518-1575043694:6041..6526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004518supercontigsc0004518:6041..6526 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.532562	0.304752	0.464558	0.354226	0.345442	0.545946	0.164665	0.308315	0.431717	0.267376	0	0.255899	0	0	0	0	0.096148	0.0985486	0	0	0.247667	0	0	0.13351	0	0.122726	0.526863	0.187428	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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