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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043731 ID=TCONS_00043731|Name=TCONS_00043731|organism=Clytia hemisphaerica|type=transcript|length=1335bp
CACTCGTTCATTAAGTTTCATTCTCTTATTATTCTTGTTTATGTATTTCC
TactaattttcttatttatgaTTGACCgcattaaaaattgaatttgagtt
CACCACCCAATATAAAAATTCGTTTTTAAGAATGCATACATNATGATTGA
CCgcattaaaaattgaatttgagttCACCACCCAATATAAAAATTCGTTT
TTAAGAATGCATACATATTAAGAAACATTAATAAAAAGTCACAACATTGA
AGATGTTGCAAACTGTGGTCATTCTGTTGTTATCACTGGTTGGACATGCT
GTTTCAGTTGCATACAGCAAGGATTACCTTGACCTAATGGACAAAACAGT
GACCAAAGACTTGAAGCAATATTATGTCGATGgaacaaattttcttattt
ctctAAACCTCCTTGTAAGAAAAATTCCTGCAGAAGATATTCCTCTATTT
ACCTTGGAGGATAATGGAGCTACAATATTTGGTATCTCAATTACAGACCA
AAAATTATCATATCAAaccaaattcaaaaaagatACTTTACCCTTGTCGT
ATAATCAATCTAAACCACTTAATATTAGATTTAAACAAGAAAATGGTGTA
ATCACTGTCTTTCGCAACTGTGCTTTGATCTATCAAGAAAGTGGTGTAAA
GAAAACAGACCTCGATTTTAAAGATTATACTCAAAGAAATTCGTTTTATT
TTCATGAGCACATCAATTTGTGCCATGCAAGATATTATCCTTTTATCAAT
CAAGTTGGAGCATGTCAACCAGCCATTTGTGAACCAGTTTCTGATAAGAA
TCTTGATTTCAACAATGATCGAAAAAGAAGAGGTGTATTGACAATAGAAC
TTGGTGAAGTGAATTTCGAGATTGCAACACCACCTCCTGGTGTAAGTATA
GAAAGCAAGTTATAACCAGGGGGGGTACagccgcagggtactaacccata
gggtactaacctgatttttaagaaaaattgtcttaggtaccaccaccccc
tttttagtaccgggtactttttttttcttaaggaaaaagggacccccacc
ccctttttagtaccgggtaccgGCTTTAAAATTACCAAGGAAAATAGGAG
ACACCACCCTTAAAACTTGCCAAGCATGGTCCCAATCTTTCCAAAGCCAG
CAAAAGCAGCTCTTTGTTGTTATTATGACTTGTATATACCATGTTTTTAA
TTCAGATCctctaaaaagttctttaaatcaAACACAGCTTTTAATTACAA
AGGTAAAACAACAAAATTCCttggcaaaagtaaaatattatatagctgTA
ATAACGGCACTTCTATCAGAAGATGTAAAAATcaa Run BLAST on NCBI transcript from alignment at sc0004514:3615..6317- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043731 ID=TCONS_00043731|Name=TCONS_00043731|organism=Clytia hemisphaerica|type=transcript|length=2703bp|location=Sequence derived from alignment at sc0004514:3615..6317- (Clytia hemisphaerica)
CACTCGTTCATTAAGTTTCATTCTCTTATTATTCTTGTTTATGTATTTCC
TACTAATTTTCTTATTTATGATTGACCGCATTAAAAATTGAATTTGAGTT
CACCACCCAATATAAAAATTCGTTTTTAAGAATGCATACATNATGATTGA
CCGCATTAAAAATTGAATTTGAGTTCACCACCCAATATAAAAATTCGTTT
TTAAGAATGCATACATATTAAGAAACATTAATAAAAAGTCACAACATTGA
AGATGTTGCAAACTGTGGTCATTCTGTTGTTATCACTGGTTGGACATGCT
GTTTCAGGTAATAACCTTTTCCATGTATATTATCTAGCTGCCTAAAAATG
CTTTATTTTGTAAAATATTAAATTTGAATCGATTTCATTTTAATATTGAA
AATCTTGGCATACATATTACATACAACCAGATTGTCTAGACATTGTGGGT
TATATTACTAATTGCTGACAATCACAATTATATTCAATCACATATCAATC
TTCATCAAACTTACATATTATTTAAATTTCTATTTCCAGTTGCATACAGC
AAGGATTACCTTGACCTAATGGACAAAACAGTGACCAAAGACTTGAAGCA
ATATTATGTCGATGGAACAAATTTTCTTATTTCTCTAAACCTCCTTGTAA
GAAAAATTCCTGCAGAAGATATTCCTCTATTTACCTTGGAGGATAATGGA
GCTACAATATTTGGTATCTCAATTACAGACCAAAAATTATCATATCAAAC
CAAATTCAAAAAAGATACTTTACCCTTGTCGTATAATCAATCTAAACCAC
TTAATATTAGATTTAAACAAGAAAATGGTGTAATCACTGTCTTTCGCAAC
TGTGCTTTGATCTATCAAGAAAGTGGTGTAAAGAAAACAGACCTCGATTT
TAAAGATTATACTCAAAGAAATTCGTTTTATTTTCATGAGCACGTGAGTA
GTTTTAATAGTCTCAATCTAGTTTTAAATTACCTTTAAAGGGAAGAAATT
TTGGCTTATGGAAATTTTGATTATGAGTCCTTTTTTCTGTGCATAAATTG
AAAAAGTTTTCAGTAAAATTATTTTTGTGTTCAAAAACTTCTTTGTATAG
ATATTATAGCTATATCTATTGTCTTTTACTTATTGATTTTAGATCAATTT
GTGCCATGCAAGATATTATCCTTTTATCAATCAAGTTGGAGCATGTCAAC
CAGCCATTTGTGAACCAGTTTCTGATAAGGTTTGTATATTGAAAACAATT
TTCCTGATTGAAAAGTATACTGATATCTTACTTTCAACCAAAGACTAGCT
AATCAATGACTACAATACAATCAAAGAGTAGAAAGACATAAAGTGTACTA
TAATTGTTGGTCTAATATCGACATCCCTCTTCTAGTTTCGACATCTTTCT
TTAGAGGTAGAAATAATAGGAAGGTCAGAATCACTGATTGAAACTAATTT
TCTTTGCTTCGCATTCAGAGAGGAAAAAATCTTGAGTCTCTCAGTGATTC
CGACCTTCCTAATATTCCTATCTTTAAAGAAGGGTGTCAAAATTAGAAGA
GGGATGTCAACATTAGACCAATAGTAATACAAAAGAAAACAAACATACAT
TTTACAGTAAAATATTGTTAAAATTGGATAATATCAGACCTGCAAAACCA
ACTGAACCTGACTGAACAAGTCAATCATCTATTTTCTATTCTCCTTTAAA
CTTTGGAATAATAACACAACCATATGCTGAGAAACCAAACTTTTGAATTT
GATTTTTCAGAATCATGCATGATTATCTATTTTGTAAAACTACTAATCAG
ACACTCTGACAAACTACTAAAACACATTTACAAAGGTATGCATTCACATA
AGTTATCTGGCTATCTTGTCATCCTTTGTCTCATTATTTTGCTTTATGCT
GCATTTTATCATCACTCTAATAAATAATATATAATCACATACAATAAAAT
GTTTAGTATTCTTGACGTCAATTTTTGACGAAGACCCTGCACTTGTATTT
TTTGTAAGAAGAACGGAACTCTAGTCTTAAAAAATTTGTATTTTCAACTG
AGGATTGTTTGAATAAGACATGAAACTGTCAGTACTTCCACTGCTTCAAT
TATCATATTCTCGATCACACATAATATTATTAAAAATGATATTATTGAAT
AGCAATTATCTTTTAGAATCTTGATTTCAACAATGATCGAAAAAGAAGAG
GTGTATTGACAATAGAACTTGGTGAAGTGAATTTCGAGATTGCAACACCA
CCTCCTGGTGTAAGTATAGAAAGCAAGTTATAACCAGGGGGGGTACAGCC
GCAGGGTACTAACCCATAGGGTACTAACCTGATTTTTAAGAAAAATTGTC
TTAGGTACCACCACCCCCTTTTTAGTACCGGGTACTTTTTTTTTCTTAAG
GAAAAAGGGACCCCCACCCCCTTTTTAGTACCGGGTACCGGCTTTAAAAT
TACCAAGGAAAATAGGAGACACCACCCTTAAAACTTGCCAAGCATGGTCC
CAATCTTTCCAAAGCCAGCAAAAGCAGCTCTTTGTTGTTATTATGACTTG
TATATACCATGTTTTTAATTCAGATCCTCTAAAAAGTTCTTTAAATCAAA
CACAGCTTTTAATTACAAAGGTAAAACAACAAAATTCCTTGGCAAAAGTA
AAATATTATATAGCTGTAATAACGGCACTTCTATCAGAAGATGTAAAAAT
CAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043731-exon-sc0004514-1575043694:6011..6317 | TCONS_00043731-exon-sc0004514-1575043694:6011..6317 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1575043694:5375..5778 | TCONS_00043731-exon-sc0004514-1575043694:5375..5778 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1575043694:5089..5175 | TCONS_00043731-exon-sc0004514-1575043694:5089..5175 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1575043694:3615..4151 | TCONS_00043731-exon-sc0004514-1575043694:3615..4151 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1510915933:6011..6317 | TCONS_00043731-exon-sc0004514-1510915933:6011..6317 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1510915933:5375..5778 | TCONS_00043731-exon-sc0004514-1510915933:5375..5778 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1510915933:5089..5175 | TCONS_00043731-exon-sc0004514-1510915933:5089..5175 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1510915933:3615..4151 | TCONS_00043731-exon-sc0004514-1510915933:3615..4151 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1491911889:6011..6317 | TCONS_00043731-exon-sc0004514-1491911889:6011..6317 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1491911889:5375..5778 | TCONS_00043731-exon-sc0004514-1491911889:5375..5778 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1491911889:5089..5175 | TCONS_00043731-exon-sc0004514-1491911889:5089..5175 | Clytia hemisphaerica | exon |
| TCONS_00043731-exon-sc0004514-1491911889:3615..4151 | TCONS_00043731-exon-sc0004514-1491911889:3615..4151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004514 | supercontig | sc0004514:3615..6317 - |
Blast
The following BLAST results are available for this feature:
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