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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043725 ID=TCONS_00043725|Name=TCONS_00043725|organism=Clytia hemisphaerica|type=transcript|length=1038bp
ttagtCACTAAAgataaaaaggttttttctaACAAAGATGTAATAGAAAT
CATAACAATGGCTTCTCAGCCACCTTCAAAGAAGCAGAAGACAGAATTAT
CAAATCCTTTGACCAAGAAGCAAGTCTTTGGAGGACTTAACGTTTGTATA
ATCGAGCAGGGATTAGGAAAAACAAGATGCAATATTTTCACAGATCAGCT
TAAAAAGCATGGAGCTGCTGTTTCCAAATCACTGGATACTGACATTGAAT
ATTTATTGGTATCAAAGGATATGAAACTAGAGAGActttttaaaattctc
aaacGTAAACAAATTAAAGATGACATCCATATAGTAAGTGTTGATTGGCT
GAGTGCATCATTGGTCTCAGGGaagcttgaaaatttgaaacctTATGAAA
AATTTGTGGATAGAAATAACGAGAAAAGAGATCCTTCAAAGCAAGGAAAT
GATTCTCTCAATACAAAGGATGAAGAAGATCTGACGGTGAGAGCCCTACC
AGGAAGTAGCTCATCTTCAGGAGTTGTACCAAAACCTAGAACCAGTTATG
AGGAATTGTTAGCACTGAGGAATCGCAAAGACCTGGATTCTTCTcctgat
gaagaagaagaaagaacttTACCTTCAGAttcaaagaaagatttgaccaA
AGTCAAAAGTGAGCTGCCGAAAGGGACCTGGGTATGTGCGAAGCCATCTT
CatcaacaaatcaaaaattcaacCATAACAAACATATCACTGAGAAGTTG
GAGGTACTTCAAAAGACATATGAAAACAGCAAAGACAAATGGAGAGCGAT
GGGTTACAAGAAAGCCATCAACTCAATCAAAAACTATTCCAAATCATTAT
CTTCTTTTGAAGAGGTAAAAAGTCTGCCATTCGTCGGTGGCCGTCTTGCC
GAAAAGATTTGGGAAATCATAGAAACAGGCCATTTGAGGAGGTTGGACCA
TATCGATGAGAAAAGTGAATTGATCAATAAATTTGCTGCTGTTTGGGGTG
CTGGACCCTCTGCCGCCGCCACATGGGTGGCCCAGGTA Run BLAST on NCBI protein sequence of TCONS_00043725-protein >TCONS_00043725-protein ID=TCONS_00043725-protein|Name=TCONS_00043725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
LVTKDKKVFSNKDVIEIITMASQPPSKKQKTELSNPLTKKQVFGGLNVCI
IEQGLGKTRCNIFTDQLKKHGAAVSKSLDTDIEYLLVSKDMKLERLFKIL
KRKQIKDDIHIVSVDWLSASLVSGKLENLKPYEKFVDRNNEKRDPSKQGN
DSLNTKDEEDLTVRALPGSSSSSGVVPKPRTSYEELLALRNRKDLDSSPD
EEEERTLPSDSKKDLTKVKSELPKGTWVCAKPSSSTNQKFNHNKHITEKL
EVLQKTYENSKDKWRAMGYKKAINSIKNYSKSLSSFEEVKSLPFVGGRLA
EKIWEIIETGHLRRLDHIDEKSELINKFAAVWGAGPSAAATWVAQV Run BLAST on NCBI transcript from alignment at sc0004511:985..2641- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043725 ID=TCONS_00043725|Name=TCONS_00043725|organism=Clytia hemisphaerica|type=transcript|length=1657bp|location=Sequence derived from alignment at sc0004511:985..2641- (Clytia hemisphaerica)
TTAGTCACTAAAGATAAAAAGGTTTTTTCTAACAAAGATGTAATAGAAAT
CATAACAATGGCTTCTCAGCCACCTTCAAAGAAGCAGAAGACAGAATTAT
CAAATCCTTTGACCAAGAAGCAAGTCTTTGGAGGACTTAACGTTTGTATA
ATCGAGCAGGGATTAGGAAAAACAAGATGCAATATTTTCACAGATCAGCT
TAAAAAGCATGGAGCTGCTGTTTCCAAATCACTGGATACTGACATTGAAT
ATTTATTGGTATCAAAGGATATGAAACTAGAGAGACTTTTTAAAATTCTC
AAACGTAAACAAATTAAAGATGACATCCATATAGTAAGTGTTGATTGGCT
GAGTGCATCATTGGTCTCAGGGAAGCTTGAAAATTTGAAACCTTATGAAA
AATTTGTGGATAGAAATAACGAGAAAAGAGATCCTTCAAAGCAAGGAAAT
GATTCTCTCAATACAAAGGATGAAGAAGATCTGACGGTGAGAGCCCTACC
AGGAAGTAGCTCATCTTCAGGAGTTGTACCAAAACCTAGAACCAGTTATG
AGGAATTGTTAGCACTGAGGAATCGCAAAGACCTGGATTCTTCTCCTGAT
GAAGAAGAAGAAAGAACTTTACCTTCAGATTCAAAGAAAGATTTGACCAA
AGTCAAAAGTGAGCTGCCGGTAAGATGACCGTAATGGCAGCTCAATACAG
TACAACACAATTAATTTTTGGACTCTTTTGGATTAGATTTTTTAATTTTA
ATGATGCCCCTGAAACATCAACATTAGTCGAATAATTAATAATCAAGACA
TTCTTTTCTACAATGATTTAGTATTAGGCAAAACAGGACAAACAGATATT
GATTAATGTGGTAAAGATTCTTCTTCCGTTGATAATACTTTTCCATTTTC
TTTCAGAAAGGGACCTGGGTATGTGCGAAGCCATCTTCATCAACAAATCA
AAAATTCAACCATAACAAACATATCACTGAGAAGTTGGAGGTAGGTTTAT
TTTCTTGAGCTTTCTTGTCTAAGAAAGGCTTTAAGACATGAAAACTTGTA
TTTTACTTGAAGCTTCAAAATACAAAAAGAGAATGGAAAACTTTTCTTTG
GCCAGACATATCCCTCTCTACCTTACTTAAGAATTTGCACCTCTTAGGCG
AATGTCAGATGTAAGAAATTCAAACTATTGAACGGAAAATCTATGTTTTA
TTGTTTCATCTTTTCAGGTACTTCAAAAGACATATGAAAACAGCAAAGAC
AAATGGAGAGCGATGGGTTACAAGAAAGCCATCAACTCAATCAAAAACTA
TTCCAAATCATTATCTTCTTTTGAAGTATATATTTGTTTTGACCATTCTT
TTACCTGGTTTATAATCATTGGATGCGATTGGCCAATTAGCGAATAGAAA
CTTTATTAGAAATTTATTTTCAATTAAAATTGTGTTAACAAATCCTGATG
CCTTTAGATGCTTTTGTCCATTTCTTTCAGGAGGTAAAAAGTCTGCCATT
CGTCGGTGGCCGTCTTGCCGAAAAGATTTGGGAAATCATAGAAACAGGCC
ATTTGAGGAGGTTGGACCATATCGATGAGAAAAGTGAATTGATCAATAAA
TTTGCTGCTGTTTGGGGTGCTGGACCCTCTGCCGCCGCCACATGGGTGGC
CCAGGTA Coding sequence (CDS) from alignment at sc0004511:985..2641- >TCONS_00043725 ID=TCONS_00043725|Name=TCONS_00043725|organism=Clytia hemisphaerica|type=CDS|length=4152bp|location=Sequence derived from alignment at sc0004511:985..2641- (Clytia hemisphaerica)
GAGGTAAAAAGTCTGCCATTCGTCGGTGGCCGTCTTGCCGAAAAGATTTG
GGAAATCATAGAAACAGGCCATTTGAGGAGGTTGGACCATATCGATGAGA
AAAGTGAATTGATCAATAAATTTGCTGCTGTTTGGGGTGCTGGACCCTCT
GCCGCCGCCACATGGGTGGCCCAGGTAGTACTTCAAAAGACATATGAAAA
CAGCAAAGACAAATGGAGAGCGATGGGTTACAAGAAAGCCATCAACTCAA
TCAAAAACTATTCCAAATCATTATCTTCTTTTGAAAAAGGGACCTGGGTA
TGTGCGAAGCCATCTTCATCAACAAATCAAAAATTCAACCATAACAAACA
TATCACTGAGAAGTTGGAGTTAGTCACTAAAGATAAAAAGGTTTTTTCTA
ACAAAGATGTAATAGAAATCATAACAATGGCTTCTCAGCCACCTTCAAAG
AAGCAGAAGACAGAATTATCAAATCCTTTGACCAAGAAGCAAGTCTTTGG
AGGACTTAACGTTTGTATAATCGAGCAGGGATTAGGAAAAACAAGATGCA
ATATTTTCACAGATCAGCTTAAAAAGCATGGAGCTGCTGTTTCCAAATCA
CTGGATACTGACATTGAATATTTATTGGTATCAAAGGATATGAAACTAGA
GAGACTTTTTAAAATTCTCAAACGTAAACAAATTAAAGATGACATCCATA
TAGTAAGTGTTGATTGGCTGAGTGCATCATTGGTCTCAGGGAAGCTTGAA
AATTTGAAACCTTATGAAAAATTTGTGGATAGAAATAACGAGAAAAGAGA
TCCTTCAAAGCAAGGAAATGATTCTCTCAATACAAAGGATGAAGAAGATC
TGACGGTGAGAGCCCTACCAGGAAGTAGCTCATCTTCAGGAGTTGTACCA
AAACCTAGAACCAGTTATGAGGAATTGTTAGCACTGAGGAATCGCAAAGA
CCTGGATTCTTCTCCTGATGAAGAAGAAGAAAGAACTTTACCTTCAGATT
CAAAGAAAGATTTGACCAAAGTCAAAAGTGAGCTGCCGGAGGTAAAAAGT
CTGCCATTCGTCGGTGGCCGTCTTGCCGAAAAGATTTGGGAAATCATAGA
AACAGGCCATTTGAGGAGGTTGGACCATATCGATGAGAAAAGTGAATTGA
TCAATAAATTTGCTGCTGTTTGGGGTGCTGGACCCTCTGCCGCCGCCACA
TGGGTGGCCCAGGTAGTACTTCAAAAGACATATGAAAACAGCAAAGACAA
ATGGAGAGCGATGGGTTACAAGAAAGCCATCAACTCAATCAAAAACTATT
CCAAATCATTATCTTCTTTTGAAAAAGGGACCTGGGTATGTGCGAAGCCA
TCTTCATCAACAAATCAAAAATTCAACCATAACAAACATATCACTGAGAA
GTTGGAGTTAGTCACTAAAGATAAAAAGGTTTTTTCTAACAAAGATGTAA
TAGAAATCATAACAATGGCTTCTCAGCCACCTTCAAAGAAGCAGAAGACA
GAATTATCAAATCCTTTGACCAAGAAGCAAGTCTTTGGAGGACTTAACGT
TTGTATAATCGAGCAGGGATTAGGAAAAACAAGATGCAATATTTTCACAG
ATCAGCTTAAAAAGCATGGAGCTGCTGTTTCCAAATCACTGGATACTGAC
ATTGAATATTTATTGGTATCAAAGGATATGAAACTAGAGAGACTTTTTAA
AATTCTCAAACGTAAACAAATTAAAGATGACATCCATATAGTAAGTGTTG
ATTGGCTGAGTGCATCATTGGTCTCAGGGAAGCTTGAAAATTTGAAACCT
TATGAAAAATTTGTGGATAGAAATAACGAGAAAAGAGATCCTTCAAAGCA
AGGAAATGATTCTCTCAATACAAAGGATGAAGAAGATCTGACGGTGAGAG
CCCTACCAGGAAGTAGCTCATCTTCAGGAGTTGTACCAAAACCTAGAACC
AGTTATGAGGAATTGTTAGCACTGAGGAATCGCAAAGACCTGGATTCTTC
TCCTGATGAAGAAGAAGAAAGAACTTTACCTTCAGATTCAAAGAAAGATT
TGACCAAAGTCAAAAGTGAGCTGCCGGAGGTAAAAAGTCTGCCATTCGTC
GGTGGCCGTCTTGCCGAAAAGATTTGGGAAATCATAGAAACAGGCCATTT
GAGGAGGTTGGACCATATCGATGAGAAAAGTGAATTGATCAATAAATTTG
CTGCTGTTTGGGGTGCTGGACCCTCTGCCGCCGCCACATGGGTGGCCCAG
GTAGTACTTCAAAAGACATATGAAAACAGCAAAGACAAATGGAGAGCGAT
GGGTTACAAGAAAGCCATCAACTCAATCAAAAACTATTCCAAATCATTAT
CTTCTTTTGAAAAAGGGACCTGGGTATGTGCGAAGCCATCTTCATCAACA
AATCAAAAATTCAACCATAACAAACATATCACTGAGAAGTTGGAGTTAGT
CACTAAAGATAAAAAGGTTTTTTCTAACAAAGATGTAATAGAAATCATAA
CAATGGCTTCTCAGCCACCTTCAAAGAAGCAGAAGACAGAATTATCAAAT
CCTTTGACCAAGAAGCAAGTCTTTGGAGGACTTAACGTTTGTATAATCGA
GCAGGGATTAGGAAAAACAAGATGCAATATTTTCACAGATCAGCTTAAAA
AGCATGGAGCTGCTGTTTCCAAATCACTGGATACTGACATTGAATATTTA
TTGGTATCAAAGGATATGAAACTAGAGAGACTTTTTAAAATTCTCAAACG
TAAACAAATTAAAGATGACATCCATATAGTAAGTGTTGATTGGCTGAGTG
CATCATTGGTCTCAGGGAAGCTTGAAAATTTGAAACCTTATGAAAAATTT
GTGGATAGAAATAACGAGAAAAGAGATCCTTCAAAGCAAGGAAATGATTC
TCTCAATACAAAGGATGAAGAAGATCTGACGGTGAGAGCCCTACCAGGAA
GTAGCTCATCTTCAGGAGTTGTACCAAAACCTAGAACCAGTTATGAGGAA
TTGTTAGCACTGAGGAATCGCAAAGACCTGGATTCTTCTCCTGATGAAGA
AGAAGAAAGAACTTTACCTTCAGATTCAAAGAAAGATTTGACCAAAGTCA
AAAGTGAGCTGCCGGAGGTAAAAAGTCTGCCATTCGTCGGTGGCCGTCTT
GCCGAAAAGATTTGGGAAATCATAGAAACAGGCCATTTGAGGAGGTTGGA
CCATATCGATGAGAAAAGTGAATTGATCAATAAATTTGCTGCTGTTTGGG
GTGCTGGACCCTCTGCCGCCGCCACATGGGTGGCCCAGGTAGTACTTCAA
AAGACATATGAAAACAGCAAAGACAAATGGAGAGCGATGGGTTACAAGAA
AGCCATCAACTCAATCAAAAACTATTCCAAATCATTATCTTCTTTTGAAA
AAGGGACCTGGGTATGTGCGAAGCCATCTTCATCAACAAATCAAAAATTC
AACCATAACAAACATATCACTGAGAAGTTGGAGTTAGTCACTAAAGATAA
AAAGGTTTTTTCTAACAAAGATGTAATAGAAATCATAACAATGGCTTCTC
AGCCACCTTCAAAGAAGCAGAAGACAGAATTATCAAATCCTTTGACCAAG
AAGCAAGTCTTTGGAGGACTTAACGTTTGTATAATCGAGCAGGGATTAGG
AAAAACAAGATGCAATATTTTCACAGATCAGCTTAAAAAGCATGGAGCTG
CTGTTTCCAAATCACTGGATACTGACATTGAATATTTATTGGTATCAAAG
GATATGAAACTAGAGAGACTTTTTAAAATTCTCAAACGTAAACAAATTAA
AGATGACATCCATATAGTAAGTGTTGATTGGCTGAGTGCATCATTGGTCT
CAGGGAAGCTTGAAAATTTGAAACCTTATGAAAAATTTGTGGATAGAAAT
AACGAGAAAAGAGATCCTTCAAAGCAAGGAAATGATTCTCTCAATACAAA
GGATGAAGAAGATCTGACGGTGAGAGCCCTACCAGGAAGTAGCTCATCTT
CAGGAGTTGTACCAAAACCTAGAACCAGTTATGAGGAATTGTTAGCACTG
AGGAATCGCAAAGACCTGGATTCTTCTCCTGATGAAGAAGAAGAAAGAAC
TTTACCTTCAGATTCAAAGAAAGATTTGACCAAAGTCAAAAGTGAGCTGC
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043725-exon-sc0004511-1575043694:1973..2641 | TCONS_00043725-exon-sc0004511-1575043694:1973..2641 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1575043694:1652..1735 | TCONS_00043725-exon-sc0004511-1575043694:1652..1735 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1575043694:1317..1424 | TCONS_00043725-exon-sc0004511-1575043694:1317..1424 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1575043694:985..1161 | TCONS_00043725-exon-sc0004511-1575043694:985..1161 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1510915933:1973..2641 | TCONS_00043725-exon-sc0004511-1510915933:1973..2641 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1510915933:1652..1735 | TCONS_00043725-exon-sc0004511-1510915933:1652..1735 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1510915933:1317..1424 | TCONS_00043725-exon-sc0004511-1510915933:1317..1424 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1510915933:985..1161 | TCONS_00043725-exon-sc0004511-1510915933:985..1161 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1491911889:1973..2641 | TCONS_00043725-exon-sc0004511-1491911889:1973..2641 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1491911889:1652..1735 | TCONS_00043725-exon-sc0004511-1491911889:1652..1735 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1491911889:1317..1424 | TCONS_00043725-exon-sc0004511-1491911889:1317..1424 | Clytia hemisphaerica | exon |
| TCONS_00043725-exon-sc0004511-1491911889:985..1161 | TCONS_00043725-exon-sc0004511-1491911889:985..1161 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004511 | supercontig | sc0004511:985..2641 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00043725 vs. Swiss-Prot (Human)
Match: DPOLL (DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 2.352e-39 Identity = 104/314 (33.12%), Postives = 159/314 (50.64%), Query Frame = 1
Query: 136 LNVCIIEQGLGKTRCNIFTDQLKKHGAAVSKSLDTDIEYLLVSKDMKLERLFKILKRKQIKDDIHIVSVDWLSASLVSGKLENLKPYEKFV-DRNNEKRDPSKQGND-SLNTKDEEDLTVRALXXXXXXXXXXXKPRTSYEELLALRNRKDLDSSPDEEEERT------------LPSDSKKDLTKVKSELPKGTWVCAKPSSSTNQKFNHNKHITEKLEVLQKTYENSKDKWRAMGYKKAINSIKNYSKSLSSFEEVKSLPFVGGRLAEKIWEIIETGHLRRLDHIDEKSELINKFXXXXXXXXXXXXTWVAQ 1035
L ++ G+G+ R +F Q+ +HG + + + +++V + M ER ++L+ Q+ +V WLS L +L ++ + F+ R + PSK D S+ E L AL + V P+ + E D + D EE + P+ + D + WVCA+PSS + NHN HITEKLEVL K Y DKWRA+GY KAIN++K++ K ++S++E S+P +G R+AEKI EI+E+GHLR+LDHI E ++ F+ +WGAG A W Q
Sbjct: 44 LRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFIPSRYLDHPQPSKAEQDASIPPGTHEALLQTALSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSS--QKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ 355
The following BLAST results are available for this feature:
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