TCONS_00043725-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00043725-protein
Unique NameTCONS_00043725-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00043725-protein ID=TCONS_00043725-protein|Name=TCONS_00043725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
LVTKDKKVFSNKDVIEIITMASQPPSKKQKTELSNPLTKKQVFGGLNVCI
IEQGLGKTRCNIFTDQLKKHGAAVSKSLDTDIEYLLVSKDMKLERLFKIL
KRKQIKDDIHIVSVDWLSASLVSGKLENLKPYEKFVDRNNEKRDPSKQGN
DSLNTKDEEDLTVRALPGSSSSSGVVPKPRTSYEELLALRNRKDLDSSPD
EEEERTLPSDSKKDLTKVKSELPKGTWVCAKPSSSTNQKFNHNKHITEKL
EVLQKTYENSKDKWRAMGYKKAINSIKNYSKSLSSFEEVKSLPFVGGRLA
EKIWEIIETGHLRRLDHIDEKSELINKFAAVWGAGPSAAATWVAQV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_027408XLOC_027408Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00043725TCONS_00043725Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR010996DNA_pol_b-like_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 243..263
NoneNo IPR availableGENE3D1.10.150.110coord: 213..319
e-value: 5.2E-26
score: 90.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..216
IPR001357BRCT domainPFAMPF00533BRCTcoord: 41..121
e-value: 1.6E-8
score: 34.7
IPR001357BRCT domainGENE3D3.40.50.10190coord: 33..134
e-value: 2.6E-14
score: 52.8
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 38..134
score: 14.397
IPR001357BRCT domainCDDcd00027BRCTcoord: 45..121
e-value: 5.79499E-5
score: 39.2271
IPR001357BRCT domainSUPERFAMILY52113BRCT domaincoord: 41..133
IPR010996DNA polymerase beta-like, N-terminal domainPFAMPF14716HHH_8coord: 243..308
e-value: 8.0E-16
score: 58.1
IPR010996DNA polymerase beta-like, N-terminal domainSUPERFAMILY47802DNA polymerase beta, N-terminal domain-likecoord: 226..318

Blast
[Close]
BLAST of TCONS_00043725-protein vs. Swiss-Prot (Human)
Match: DPOLL (DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 6.390e-45
Identity = 104/314 (33.12%), Postives = 159/314 (50.64%), Query Frame = 0 
Query:   46 LNVCIIEQGLGKTRCNIFTDQLKKHGAAVSKSLDTDIEYLLVSKDMKLERLFKILKRKQIKDDIHIVSVDWLSASLVSGKLENLKPYEKFV-DRNNEKRDPSKQGND-SLNTKDEEDLTVRALPGSSSSSGVVPKPRTSYEELLALRNRKDLDSSPDEEEERT------------LPSDSKKDLTKVKSELPKGTWVCAKPSSSTNQKFNHNKHITEKLEVLQKTYENSKDKWRAMGYKKAINSIKNYSKSLSSFEEVKSLPFVGGRLAEKIWEIIETGHLRRLDHIDEKSELINKFAAVWGAGPSAAATWVAQ 345
            L   ++  G+G+ R  +F  Q+ +HG  +  +    + +++V + M  ER  ++L+  Q+     +V   WLS  L   +L ++  +  F+  R  +   PSK   D S+     E L   AL      +  V  P+ + E           D + D EE +              P+  + D     +      WVCA+PSS   +  NHN HITEKLEVL K Y    DKWRA+GY KAIN++K++ K ++S++E  S+P +G R+AEKI EI+E+GHLR+LDHI E   ++  F+ +WGAG   A  W  Q
Sbjct:   44 LRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSLCLQERRLVDVAGFSIFIPSRYLDHPQPSKAEQDASIPPGTHEALLQTALSPPPPPTRPVSPPQKAKEAPNTQAQPISDDEASDGEETQVSAADLEALISGHYPTSLEGDCEPSPAPAVLDKWVCAQPSS--QKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ 355
The following BLAST results are available for this feature:
BLAST of TCONS_00043725-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLL6.390e-4533.12DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1... [more]
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