TCONS_00043717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043717
Unique NameTCONS_00043717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043717 ID=TCONS_00043717|Name=TCONS_00043717|organism=Clytia hemisphaerica|type=transcript|length=526bp
AACAATACTGAAGTCTGAATCGGGTTATTGTAGTCTAATGAAGATTAAAG
AGCCCATCAACAATGGTCCATGTGGGGAGAACCCGTATTGTAGGGCCTCT
CCTATTTCAAGTCACGCTGTCATGAAATGCAAGCATTGTAGATTGACTTA
CCATAAATTTTGTGTGGCTTGGAATGAGGAATTCTGTGGATGTGATAACC
TGGTTCCTCTGGCACAAAGtgtaaaaacaaaaattctcgATCCCGATACG
TTCGACAAATATCTTGACATAGGAGTAGATTTCCTTGGGGTAAGAAAATA
TCTACTATTTTTGTCTGTCTGGTTATCCaacgatttgaaaataatttctg
cGGTCATTTCAGACCAAGAGGGTATGTCACGTTGTTTACCAAAAACCAAT
TTATAATATCGATTAAGGGCTATGACCCTCGAAAAGTTGATTTTGTTATT
TGAACATAACATTTATAGGTTCCTTACagttttaacaaagaattgccttt
taatcaaatcccttaagagtaattaa
Run BLAST on NCBI

protein sequence of TCONS_00043717-protein

>TCONS_00043717-protein ID=TCONS_00043717-protein|Name=TCONS_00043717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
TILKSESGYCSLMKIKEPINNGPCGENPYCRASPISSHAVMKCKHCRLTY
HKFCVAWNEEFCGCDNLVPLAQSVKTKILDPDTFDKYLDIGVDFLGVRKY
LLFLSVWLSNDLKIISAVISDQEGMSRCLPKTNL
Run BLAST on NCBI

transcript from alignment at sc0004504:5632..6631-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043717 ID=TCONS_00043717|Name=TCONS_00043717|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at sc0004504:5632..6631- (Clytia hemisphaerica)
AACAATACTGAAGTCTGAATCGGGTTATTGTAGTCTAATGAAGATTAAAG
AGCCCATCAACAATGGTCCATGTGGGGAGAACCCGTATTGTAGGGCCTCT
CCTATTTCAAGTCACGCTGTCATGAAATGCAAGCATTGTAGATTGACTTA
CCATAAATTTTGTGTGGCTTGGAATGAGGAATTCTGTGGATGTGATAACC
TGGTTCCTCTGGCACAAAGGTCTGTATCAAATTAGATTTCTTTCANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCGGCAGGCACCTCCCTTGAAAGTATCTATCTTCATAATAGCTC
GAATGGTTTATGCTTTTGGAGCTTAAGTTATGACATTAATGGGTCTAAGT
TTTGTCTCAAAATTGTAAAAGGAGCTGGTTTTAGATTATATTTTCATCTT
TGTTGGGGACCGTTCTTTTTTTCTTTTTTTCTTTTTTCTCTTTTTTTTTT
TGGCTTGGGGTATTATTTTAACCTGGCCTAAACGTTAAGCCCATAGCCCA
CTGTATGAAAGCCCATGTGGTATAACAACCGCTATTAATTATTCTATTTC
AATAAAATAATTCATTTTCTAAATAGAGAAATTTTTTTTCTAGTGTAAAA
ACAAAAATTCTCGATCCCGATACGTTCGACAAATATCTTGACATAGGAGT
AGATTTCCTTGGGGTAAGAAAATATCTACTATTTTTGTCTGTCTGGTTAT
CCAACGATTTGAAAATAATTTCTGCGGTCATTTCAGACCAAGAGGGTATG
TCACGTTGTTTACCAAAAACCAATTTATAATATCGATTAAGGGCTATGAC
CCTCGAAAAGTTGATTTTGTTATTTGAACATAACATTTATAGGTTCCTTA
CAGTTTTAACAAAGAATTGCCTTTTAATCAAATCCCTTAAGAGTAATTAA

Coding sequence (CDS) from alignment at sc0004504:5632..6631-

>TCONS_00043717 ID=TCONS_00043717|Name=TCONS_00043717|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0004504:5632..6631- (Clytia hemisphaerica)
TGTAAAAACAAAAATTCTCGATCCCGATACGTTCGACAAATATCTTGACA
TAGGAGTAGATTTCCTTGGGGTAAGAAAATATCTACTATTTTTGTCTGTC
TGGTTATCCAACGATTTGAAAATAATTTCTGCGGTCATTTCAGACCAAGA
GGGTATGTCACGTTGTTTACCAAAAACCAATTTATAAACAATACTGAAGT
CTGAATCGGGTTATTGTAGTCTAATGAAGATTAAAGAGCCCATCAACAAT
GGTCCATGTGGGGAGAACCCGTATTGTAGGGCCTCTCCTATTTCAAGTCA
CGCTGTCATGAAATGCAAGCATTGTAGATTGACTTACCATAAATTTTGTG
TGGCTTGGAATGAGGAATTCTGTGGATGTGATAACCTGGTTCCTCTGGCA
CAAAGTGTAAAAACAAAAATTCTCGATCCCGATACGTTCGACAAATATCT
TGACATAGGAGTAGATTTCCTTGGGGTAAGAAAATATCTACTATTTTTGT
CTGTCTGGTTATCCAACGATTTGAAAATAATTTCTGCGGTCATTTCAGAC
CAAGAGGGTATGTCACGTTGTTTACCAAAAACCAATTTATAAACAATACT
GAAGTCTGAATCGGGTTATTGTAGTCTAATGAAGATTAAAGAGCCCATCA
ACAATGGTCCATGTGGGGAGAACCCGTATTGTAGGGCCTCTCCTATTTCA
AGTCACGCTGTCATGAAATGCAAGCATTGTAGATTGACTTACCATAAATT
TTGTGTGGCTTGGAATGAGGAATTCTGTGGATGTGATAACCTGGTTCCTC
TGGCACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027400XLOC_027400Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043717-proteinTCONS_00043717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043717-exon-sc0004504-1575043694:6413..6631TCONS_00043717-exon-sc0004504-1575043694:6413..6631Clytia hemisphaericaexon
TCONS_00043717-exon-sc0004504-1575043694:5632..5938TCONS_00043717-exon-sc0004504-1575043694:5632..5938Clytia hemisphaericaexon
TCONS_00043717-exon-sc0004504-1510915933:6413..6631TCONS_00043717-exon-sc0004504-1510915933:6413..6631Clytia hemisphaericaexon
TCONS_00043717-exon-sc0004504-1510915933:5632..5938TCONS_00043717-exon-sc0004504-1510915933:5632..5938Clytia hemisphaericaexon
TCONS_00043717-exon-sc0004504-1491911889:6413..6631TCONS_00043717-exon-sc0004504-1491911889:6413..6631Clytia hemisphaericaexon
TCONS_00043717-exon-sc0004504-1491911889:5632..5938TCONS_00043717-exon-sc0004504-1491911889:5632..5938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004504supercontigsc0004504:5632..6631 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.21072	0.182034	0.284534	0.702186	0.533352	1.55735	0.899821	0.949364	0.695928	1.26245	0.224083	0.823988	0	0.213451	0.284091	0.162511	0.485742	0	0.290736	0.177884	0	0	0.220899	0.219342	0	0	0.208567	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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