TCONS_00043713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043713
Unique NameTCONS_00043713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043713 ID=TCONS_00043713|Name=TCONS_00043713|organism=Clytia hemisphaerica|type=transcript|length=593bp
NNAAAAACCTGGAATAATGATTATTTTTGCTCTTACGTGTAAGAGTAACT
ATGAGGTTTTTGTAAGTTTTGTATCgttgataataaaaagttttcataat
tgagtctttggttttgatatattttcttGAGTAATATTGACGTTGAGAAA
TTGATTTGATAATCCCAGGGGTGATCCATGGTTTAGCTCTGTTTTTTTGT
TGGCGTTTTGTCACAATTACAGTTGGAACATGTTGATCAATTAGGTTTTG
AATTAGATCATAGAATGTTTTGAAAGATTGACCAACATCTGTTATGTGAT
ATAATTTGTTTGCCCAATCAGTGCCAAGAAAGTCtagaataaaattattt
tggtcaaaatttttccaatctttCCTAGAAGATTTACCAGGCTTTGGTTT
GTTAGAAGAACCACAGACAAGGTGAAATTGGGGAAGATGATCATAGATGG
AATAAAGCAGATTACCTGAAAACTGTGTTTTTCAGAAATTAAGGAAAAGA
TATTATCGATAAGTGTCATAGAGTGGTCAGTAATACGAGTAGGAAGGAAA
ATATTAGGTATAAGAAAGTGTGATCCAAAGTTGTTCAGGTAAG
Run BLAST on NCBI

transcript from alignment at sc0004501:7..599

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043713 ID=TCONS_00043713|Name=TCONS_00043713|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at sc0004501:7..599 (Clytia hemisphaerica)
CTTACCTGAACAACTTTGGATCACACTTTCTTATACCTAATATTTTCCTT
CCTACTCGTATTACTGACCACTCTATGACACTTATCGATAATATCTTTTC
CTTAATTTCTGAAAAACACAGTTTTCAGGTAATCTGCTTTATTCCATCTA
TGATCATCTTCCCCAATTTCACCTTGTCTGTGGTTCTTCTAACAAACCAA
AGCCTGGTAAATCTTCTAGGaaagattggaaaaattttgaccaaaataat
tttattctaGACTTTCTTGGCACTGATTGGGCAAACAAATTATATCACAT
AACAGATGTTGGTCAATCTTTCAAAACATTCTATGATCTAATTCAAAACC
TAATTGATCAACATGTTCCAACTGTAATTGTGACAAAACGCCAACAAAAA
AACAGAGCTAAACCATGGATCACCCCTGGGATTATCAAATCAATTTCTCA
ACGTCAATATTACTCaagaaaatatatcaaaaccaaagactcaattatga
aaactttttattatcaacGATACAAAACTTACAAAAACCTCATAGTTACT
CTTACACGTAAGAGCAAAAATAATCATTATTCCAGGTTTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027396XLOC_027396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043713-exon-sc0004501-1491911889:7..599TCONS_00043713-exon-sc0004501-1491911889:7..599Clytia hemisphaericaexon
TCONS_00043713-exon-sc0004501-1510915933:7..599TCONS_00043713-exon-sc0004501-1510915933:7..599Clytia hemisphaericaexon
TCONS_00043713-exon-sc0004501-1575043694:7..599TCONS_00043713-exon-sc0004501-1575043694:7..599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004501supercontigsc0004501:7..599 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08513	0.578538	1.90897	1.25451	2.42225	1.29301	0.7385	0.757503	0.332505	0.894943	0.687605	0.615359	0.406852	0	0.423393	0.672081	0	0.471494	0.125647	1.42869	1.27887	1.73652	0.551476	0.289759	0.19839	0.862424	2.18478	2.83847	0.138622	1.18467
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top