TCONS_00043712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043712
Unique NameTCONS_00043712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043712 ID=TCONS_00043712|Name=TCONS_00043712|organism=Clytia hemisphaerica|type=transcript|length=369bp
AACAGGGTGAATCGACAGTGCCGAAAAATATTGCTGATGtaatgcaaaaa
attaaaacaaaagttGTCAAAGAGGCTGTTCGAGTTTATGAATTTATGAA
AGATTATGATAAATTGCGGACCGGAAGAATGTTGAAGACCAGTTTTCCGC
GCGCTCTCGATTTGTGTGCGCTCGGTCTAAATTATTCTGAAATCACAACA
GTTATGGAGTGgTATTCGTCGCCAGATCATGAGGGTTATGTAGATTATTA
TCGATTCTGTGATGATGTTGAAAGCTGCTTCACTCAAAAAGGTATCTatt
taaatcaatcaatattcgAATGTCTAATGGTAAACTACCTCTGAAACTTT
Ctttcttcaaataaaaaag
Run BLAST on NCBI

protein sequence of TCONS_00043712-protein

>TCONS_00043712-protein ID=TCONS_00043712-protein|Name=TCONS_00043712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
QGESTVPKNIADVMQKIKTKVVKEAVRVYEFMKDYDKLRTGRMLKTSFPR
ALDLCALGLNYSEITTVMEWYSSPDHEGYVDYYRFCDDVESCFTQKGIYL
NQSIFECLMVNYL
Run BLAST on NCBI

transcript from alignment at sc0004499:466..1029-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043712 ID=TCONS_00043712|Name=TCONS_00043712|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0004499:466..1029- (Clytia hemisphaerica)
AACAGGGTGAATCGACAGTGCCGAAAAATATTGCTGATGTAATGCAAAAA
ATTAAAACAAAAGTTGTCAAAGAGGCTGTTCGAGTTTATGAATTTATGAA
AGATTATGATAAATTGCGGACCGGAAGAATGTTGAAGACCAGTTTTCCGC
GCGCTCTCGATTTGTGTGCGCTCGGTCTAAATTATTCTGAAATCACAACA
GTTATGGAGTGGTAAGAATTTTACTGTTTTAGAATTCTGTAAGAGGCTCG
TGAAATTCCCATTCAAGATTATCACCTGGAATTTTACACTAATTTTGGGC
CAAAAAGATTAATTATCTCACAGCCAGCTCAATATATCTGGAAAACCGTG
CCATTTTTCATTTCGGAACAATTTCGCACAACTCATTCTTTCATTCATTC
ATTTAGGTATTCGTCGCCAGATCATGAGGGTTATGTAGATTATTATCGAT
TCTGTGATGATGTTGAAAGCTGCTTCACTCAAAAAGGTATCTATTTAAAT
CAATCAATATTCGAATGTCTAATGGTAAACTACCTCTGAAACTTTCTTTC
TTCAAATAAAAAAG

Coding sequence (CDS) from alignment at sc0004499:466..1029-

>TCONS_00043712 ID=TCONS_00043712|Name=TCONS_00043712|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0004499:466..1029- (Clytia hemisphaerica)
GTATTCGTCGCCAGATCATGAGGGTTATGTAGATTATTATCGATTCTGTG
ATGATGTTGAAAGCTGCTTCACTCAAAAAGGTATCTATTTAAATCAATCA
ATATTCGAATGTCTAATGGTAAACTACCTCTGACAGGGTGAATCGACAGT
GCCGAAAAATATTGCTGATGTAATGCAAAAAATTAAAACAAAAGTTGTCA
AAGAGGCTGTTCGAGTTTATGAATTTATGAAAGATTATGATAAATTGCGG
ACCGGAAGAATGTTGAAGACCAGTTTTCCGCGCGCTCTCGATTTGTGTGC
GCTCGGTCTAAATTATTCTGAAATCACAACAGTTATGGAGTGGTATTCGT
CGCCAGATCATGAGGGTTATGTAGATTATTATCGATTCTGTGATGATGTT
GAAAGCTGCTTCACTCAAAAAGGTATCTATTTAAATCAATCAATATTCGA
ATGTCTAATGGTAAACTACCTCTGACAGGGTGAATCGACAGTGCCGAAAA
ATATTGCTGATGTAATGCAAAAAATTAAAACAAAAGTTGTCAAAGAGGCT
GTTCGAGTTTATGAATTTATGAAAGATTATGATAAATTGCGGACCGGAAG
AATGTTGAAGACCAGTTTTCCGCGCGCTCTCGATTTGTGTGCGCTCGGTC
TAAATTATTCTGAAATCACAACAGTTATGGAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027395XLOC_027395Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043712-proteinTCONS_00043712-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043712-exon-sc0004499-1575043694:819..1029TCONS_00043712-exon-sc0004499-1575043694:819..1029Clytia hemisphaericaexon
TCONS_00043712-exon-sc0004499-1575043694:466..623TCONS_00043712-exon-sc0004499-1575043694:466..623Clytia hemisphaericaexon
TCONS_00043712-exon-sc0004499-1510915933:819..1029TCONS_00043712-exon-sc0004499-1510915933:819..1029Clytia hemisphaericaexon
TCONS_00043712-exon-sc0004499-1510915933:466..623TCONS_00043712-exon-sc0004499-1510915933:466..623Clytia hemisphaericaexon
TCONS_00043712-exon-sc0004499-1491911889:819..1029TCONS_00043712-exon-sc0004499-1491911889:819..1029Clytia hemisphaericaexon
TCONS_00043712-exon-sc0004499-1491911889:466..623TCONS_00043712-exon-sc0004499-1491911889:466..623Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004499supercontigsc0004499:466..1029 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.951	24.318	95.3337	109.087	8.30491	6.48588	2.02918	1.94825	13.7446	20.214	10.228	16.2006	1.66153	0.696998	4.02657	2.55694	4.41426	6.45493	5.52593	3.40304	3.89933	4.16141	8.60259	7.89799	0.291551	0	4.62948	7.9888	5.53629	4.78826
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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