TCONS_00043702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043702
Unique NameTCONS_00043702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043702 ID=TCONS_00043702|Name=TCONS_00043702|organism=Clytia hemisphaerica|type=transcript|length=1607bp
NNAAAGTGAtggaaatattaaaatattatgCTTGAAACTGTTCACCGAAG
TCTCAGCTTTTTATCTGGAATCTGAAGAAAACGAAGGACTTGGTACCTCA
GCTGATCAAAGAACCCTGTCCAAAATCAATTTGCTCAAGGTTATCAATAA
GGGCTTCATACCGCGATTCGGAAATCTGCTTCAAGACCAGATTCCTTTTC
CATCGTACAGTGTCAAACTCATGCGCGCATGCGTTGAAAAGTCGCACGAC
ATGGCTAAAACGTTGCTTCAGGATACGGTGGTCTTATCCATGCTGTTTAG
TATCTTGAAGGACAATCGAACCGAGATTTACGATTCTGTTTTACAAAGCA
CTGTGGGTATTTTTAGTAATTTGGTACCATGTAAAGAGTTAAAGTTGGCT
TTACTATGTGAGCAAGACTTTCTAGGGGATGTGGCGTCTTTGGTTGAAAC
GGCTAACTCATATCTTGGGAACCACTCCTACGAAATGTCACATTTGCTTT
TGCAGTTGTTGGATATTTTAAACCACATTTTAAAGAAAGTCGAGGAGCCT
GTCAAAAGAGTTTTATCTTCAAAGGGAGCAAGAAAGCCTGGCTCACCGTC
TGCTAACGACACTGAACAACTTTTACAAGAGACTAAACATTTATCCAAGC
TTGATGGTCTATTAATGAACCTGTCGATTGCTAATGATTGTGATATACAA
GAATGGGCTTGTCGTTGTTTGTATCTATCAGCTGAACTATACGGTGGTAG
CCAGGACGAATGCAATCTCACCATAGACCATATTGAGTCCCTTTTGTCGG
CCGTCAAATCCTCAGGCGTCATCTCTAGGAAACGCCAAAAATTGTTAATG
CGTATATTGAAACGTTTTCTTCAGACCAATGAGTTTTGTCAACAATATGC
GTTGGAATCACCAGCGTTGAAAGACCTTTTTGAAGGATTGTTATCATCCA
CTAAAGAAGGCACTGACCAGGATTCGAAATCTGTACGTCAAATGGCAACA
GATTTACTTGGAAAATGGACGAAACATTAATGGTGTACTGTATATACTGA
AGTCTGTCCTAGATAAGTGTGAATGTACTCTTTTTCActtctttgcaaat
tttcaaGGGAATTTACGGTGAAAACATCGACATGGTTTTCATACAACAGC
CAAATGAAATGCACACTTATATTGTATACAGAGTTCAGAACTTCAAAGTA
CTTGTCATTACTGTATTGTTTTTTAATTGAAGTTTCTAGAcacaggaaat
ttttttgattcccTAGGCTATGGAAATGTGTATTTCCAGATCTGGAATTC
TAGAATTTCCCTAACCAATCCCTAGCAAGGGAAGGTGCAACAGCTCCCta
gttatggaaatgaaatttcccAACCTGGGGATGTTAAATTTCCCTATTAT
TGAAAAGTGCCTTTCTCGAGCGAACCCCAATAAAACCCAATAGGGTTACC
CATATTCACGAATCAAATCCTTCCTTTGATTTATagaaagctggtaaaat
aaTTTCACTaacctgaaaataattttcccaAACTCAGACCGAATTTGTGA
CAGTTTAAAACTTTTGATTGAATTGTCTTATTTGAaggtttgaaaaataa
gttctgT
Run BLAST on NCBI

protein sequence of TCONS_00043702-protein

>TCONS_00043702-protein ID=TCONS_00043702-protein|Name=TCONS_00043702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
XSDGNIKILCLKLFTEVSAFYLESEENEGLGTSADQRTLSKINLLKVINK
GFIPRFGNLLQDQIPFPSYSVKLMRACVEKSHDMAKTLLQDTVVLSMLFS
ILKDNRTEIYDSVLQSTVGIFSNLVPCKELKLALLCEQDFLGDVASLVET
ANSYLGNHSYEMSHLLLQLLDILNHILKKVEEPVKRVLSSKGARKPGSPS
ANDTEQLLQETKHLSKLDGLLMNLSIANDCDIQEWACRCLYLSAELYGGS
QDECNLTIDHIESLLSAVKSSGVISRKRQKLLMRILKRFLQTNEFCQQYA
LESPALKDLFEGLLSSTKEGTDQDSKSVRQMATDLLGKWTKH
Run BLAST on NCBI

transcript from alignment at sc0004490:3521..5535-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043702 ID=TCONS_00043702|Name=TCONS_00043702|organism=Clytia hemisphaerica|type=transcript|length=2015bp|location=Sequence derived from alignment at sc0004490:3521..5535- (Clytia hemisphaerica)
NNAAAGTGATGGAAATATTAAAATATTATGCTTGAAACTGTTCACCGAAG
TCTCAGCTTTTTATCTGGAATCTGAAGAAAACGAAGGACTTGGTACCTCA
GCTGATCAAAGAACCCTGTCCAAAATCAATTTGCTCAAGGTATGAATATT
TTTTCTGTGATTTTATTGATGCGTATTTTAGGTATTCTGTATTTGCATTT
TTGTTTTCATACCACAACAGCTTAATTTAGGCATACAAACATTTGCGAAT
TAAAACTTTTACAAGTTTTGGCCTTTTTTCTTTGAATTTGCGAAAGTTTA
TGTCCTAAATCTCGCAATTTTTCGGCCTCACGAAAATGTGTACATCTCAT
TGTGGTATTACTGTAATGTATCAAAACGCCAAATGGCGAACGCTTTTATA
AATTTAAATGAAATAAGCTTACAGGCTGTACACAGTAAAATTCCCTTTCT
ATTTGGTAGATTAAAACCAATAAGACCACGCATAGTATAAGAAATTTCAA
ATCGCTGCTGCTTGACGATTCAATTTCCATTCTATTCCTTCGTTTAGGTT
ATCAATAAGGGCTTCATACCGCGATTCGGAAATCTGCTTCAAGACCAGAT
TCCTTTTCCATCGTACAGTGTCAAACTCATGCGCGCATGCGTTGAAAAGT
CGCACGACATGGCTAAAACGTTGCTTCAGGATACGGTGGTCTTATCCATG
CTGTTTAGTATCTTGAAGGACAATCGAACCGAGATTTACGATTCTGTTTT
ACAAAGCACTGTGGGTATTTTTAGTAATTTGGTACCATGTAAAGAGTTAA
AGTTGGCTTTACTATGTGAGCAAGACTTTCTAGGGGATGTGGCGTCTTTG
GTTGAAACGGCTAACTCATATCTTGGGAACCACTCCTACGAAATGTCACA
TTTGCTTTTGCAGTTGTTGGATATTTTAAACCACATTTTAAAGAAAGTCG
AGGAGCCTGTCAAAAGAGTTTTATCTTCAAAGGGAGCAAGAAAGCCTGGC
TCACCGTCTGCTAACGACACTGAACAACTTTTACAAGAGACTAAACATTT
ATCCAAGCTTGATGGTCTATTAATGAACCTGTCGATTGCTAATGATTGTG
ATATACAAGAATGGGCTTGTCGTTGTTTGTATCTATCAGCTGAACTATAC
GGTGGTAGCCAGGACGAATGCAATCTCACCATAGACCATATTGAGTCCCT
TTTGTCGGCCGTCAAATCCTCAGGCGTCATCTCTAGGAAACGCCAAAAAT
TGTTAATGCGTATATTGAAACGTTTTCTTCAGACCAATGAGTTTTGTCAA
CAATATGCGTTGGAATCACCAGCGTTGAAAGACCTTTTTGAAGGATTGTT
ATCATCCACTAAAGAAGGCACTGACCAGGATTCGAAATCTGTACGTCAAA
TGGCAACAGATTTACTTGGAAAATGGACGAAACATTAATGGTGTACTGTA
TATACTGAAGTCTGTCCTAGATAAGTGTGAATGTACTCTTTTTCACTTCT
TTGCAAATTTTCAAGGGAATTTACGGTGAAAACATCGACATGGTTTTCAT
ACAACAGCCAAATGAAATGCACACTTATATTGTATACAGAGTTCAGAACT
TCAAAGTACTTGTCATTACTGTATTGTTTTTTAATTGAAGTTTCTAGACA
CAGGAAATTTTTTTGATTCCCTAGGCTATGGAAATGTGTATTTCCAGATC
TGGAATTCTAGAATTTCCCTAACCAATCCCTAGCAAGGGAAGGTGCAACA
GCTCCCTAGTTATGGAAATGAAATTTCCCAACCTGGGGATGTTAAATTTC
CCTATTATTGAAAAGTGCCTTTCTCGAGCGAACCCCAATAAAACCCAATA
GGGTTACCCATATTCACGAATCAAATCCTTCCTTTGATTTATAGAAAGCT
GGTAAAATAATTTCACTAACCTGAAAATAATTTTCCCAAACTCAGACCGA
ATTTGTGACAGTTTAAAACTTTTGATTGAATTGTCTTATTTGAAGGTTTG
AAAAATAAGTTCTGT

Coding sequence (CDS) from alignment at sc0004490:3521..5535-

>TCONS_00043702 ID=TCONS_00043702|Name=TCONS_00043702|organism=Clytia hemisphaerica|type=CDS|length=2058bp|location=Sequence derived from alignment at sc0004490:3521..5535- (Clytia hemisphaerica)
GTTATCAATAAGGGCTTCATACCGCGATTCGGAAATCTGCTTCAAGACCA
GATTCCTTTTCCATCGTACAGTGTCAAACTCATGCGCGCATGCGTTGAAA
AGTCGCACGACATGGCTAAAACGTTGCTTCAGGATACGGTGGTCTTATCC
ATGCTGTTTAGTATCTTGAAGGACAATCGAACCGAGATTTACGATTCTGT
TTTACAAAGCACTGTGGGTATTTTTAGTAATTTGGTACCATGTAAAGAGT
TAAAGTTGGCTTTACTATGTGAGCAAGACTTTCTAGGGGATGTGGCGTCT
TTGGTTGAAACGGCTAACTCATATCTTGGGAACCACTCCTACGAAATGTC
ACATTTGCTTTTGCAGTTGTTGGATATTTTAAACCACATTTTAAAGAAAG
TCGAGGAGCCTGTCAAAAGAGTTTTATCTTCAAAGGGAGCAAGAAAGCCT
GGCTCACCGTCTGCTAACGACACTGAACAACTTTTACAAGAGACTAAACA
TTTATCCAAGCTTGATGGTCTATTAATGAACCTGTCGATTGCTAATGATT
GTGATATACAAGAATGGGCTTGTCGTTGTTTGTATCTATCAGCTGAACTA
TACGGTGGTAGCCAGGACGAATGCAATCTCACCATAGACCATATTGAGTC
CCTTTTGTCGGCCGTCAAATCCTCAGGCGTCATCTCTAGGAAACGCCAAA
AATTGTTAATGCGTATATTGAAACGTTTTCTTCAGACCAATGAGTTTTGT
CAACAATATGCGTTGGAATCACCAGCGTTGAAAGACCTTTTTGAAGGATT
GTTATCATCCACTAAAGAAGGCACTGACCAGGATTCGAAATCTGTACGTC
AAATGGCAACAGATTTACTTGGAAAATGGACGAAACATTAANAAAGTGAT
GGAAATATTAAAATATTATGCTTGAAACTGTTCACCGAAGTCTCAGCTTT
TTATCTGGAATCTGAAGAAAACGAAGGACTTGGTACCTCAGCTGATCAAA
GAACCCTGTCCAAAATCAATTTGCTCAAGGTTATCAATAAGGGCTTCATA
CCGCGATTCGGAAATCTGCTTCAAGACCAGATTCCTTTTCCATCGTACAG
TGTCAAACTCATGCGCGCATGCGTTGAAAAGTCGCACGACATGGCTAAAA
CGTTGCTTCAGGATACGGTGGTCTTATCCATGCTGTTTAGTATCTTGAAG
GACAATCGAACCGAGATTTACGATTCTGTTTTACAAAGCACTGTGGGTAT
TTTTAGTAATTTGGTACCATGTAAAGAGTTAAAGTTGGCTTTACTATGTG
AGCAAGACTTTCTAGGGGATGTGGCGTCTTTGGTTGAAACGGCTAACTCA
TATCTTGGGAACCACTCCTACGAAATGTCACATTTGCTTTTGCAGTTGTT
GGATATTTTAAACCACATTTTAAAGAAAGTCGAGGAGCCTGTCAAAAGAG
TTTTATCTTCAAAGGGAGCAAGAAAGCCTGGCTCACCGTCTGCTAACGAC
ACTGAACAACTTTTACAAGAGACTAAACATTTATCCAAGCTTGATGGTCT
ATTAATGAACCTGTCGATTGCTAATGATTGTGATATACAAGAATGGGCTT
GTCGTTGTTTGTATCTATCAGCTGAACTATACGGTGGTAGCCAGGACGAA
TGCAATCTCACCATAGACCATATTGAGTCCCTTTTGTCGGCCGTCAAATC
CTCAGGCGTCATCTCTAGGAAACGCCAAAAATTGTTAATGCGTATATTGA
AACGTTTTCTTCAGACCAATGAGTTTTGTCAACAATATGCGTTGGAATCA
CCAGCGTTGAAAGACCTTTTTGAAGGATTGTTATCATCCACTAAAGAAGG
CACTGACCAGGATTCGAAATCTGTACGTCAAATGGCAACAGATTTACTTG
GAAAATGGACGAAACATTAANAAAGTGATGGAAATATTAAAATATTATGC
TTGAAACTGTTCACCGAAGTCTCAGCTTTTTATCTGGAATCTGAAGAAAA
CGAAGGACTTGGTACCTCAGCTGATCAAAGAACCCTGTCCAAAATCAATT
TGCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027386XLOC_027386Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043702-proteinTCONS_00043702-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043702-exon-sc0004490-1575043694:5397..5535TCONS_00043702-exon-sc0004490-1575043694:5397..5535Clytia hemisphaericaexon
TCONS_00043702-exon-sc0004490-1575043694:3521..4988TCONS_00043702-exon-sc0004490-1575043694:3521..4988Clytia hemisphaericaexon
TCONS_00043702-exon-sc0004490-1510915933:5397..5535TCONS_00043702-exon-sc0004490-1510915933:5397..5535Clytia hemisphaericaexon
TCONS_00043702-exon-sc0004490-1510915933:3521..4988TCONS_00043702-exon-sc0004490-1510915933:3521..4988Clytia hemisphaericaexon
TCONS_00043702-exon-sc0004490-1491911889:5397..5535TCONS_00043702-exon-sc0004490-1491911889:5397..5535Clytia hemisphaericaexon
TCONS_00043702-exon-sc0004490-1491911889:3521..4988TCONS_00043702-exon-sc0004490-1491911889:3521..4988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004490supercontigsc0004490:3521..5535 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.07418	3.48639	1.23871	0.665154	9.84096	7.23811	6.00239	6.60332	3.9088	5.70551	3.85695	2.91433	3.81359	3.43267	1.71744	2.61195	3.5444	3.77129	1.08769	1.59765	2.75343	2.95782	3.15961	3.49531	7.80505	8.68576	1.82792	0.908211	3.82005	3.60115
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00043702 vs. Swiss-Prot (Human)
Match: ULK4 (Serine/threonine-protein kinase ULK4 OS=Homo sapiens GN=ULK4 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.719e-16
Identity = 84/296 (28.38%), Postives = 156/296 (52.70%), Query Frame = 2 
Query:   20 KILCLKLFTEVSAFYLESEENEGL-GTSADQRTLSKINLLKVINKGFIPRFGNLLQDQIPFPSYSVKLMRACVEKSHDMAKTLLQDTVVLSMLFSILKDNRTEIYDSVLQSTVGIFSNLVPCKELKLALLCEQDFLGDVASLV-ETANSYL---GNHSYEMSXXXXXXXXXXXXXXKKVEEPVKRVLSSKGARKPGS---PSANDTEQLLQETKHLSKLDGLLMNLSIANDCDIQEWACRCLYLSAELYGGSQDECNLTIDHIESLLSAVKSSGVISRKRQKLLMRILKRFLQTNE 883
            ++  L+L +E ++  +  E  +G    S D    S  NLL +I    +P++ ++L +  P P+Y++KL+ A  E +    + L++++ ++ ++F +  +++  I  + +QS + + SNLV CK+  + LL EQ  +  + +L+ ETA   L     ++ EM+  LL  L  + H +      + R+  +  A+K GS   P A   E LL   + L+ L  LL+ L    D +I + + +CL +  +LYGG   + +L+ +++E     + S      K QKLL+RIL+R + +NE
Sbjct:  948 RLFSLRLLSETTSLLVNQEFGDGKEKASVD----SDSNLLALIRDVLLPQYEHILLEPDPVPAYALKLLVAMTEHNPTFTR-LVEESKLIPLIFEVTLEHQESILGNTMQSVIALLSNLVACKDSNMELLYEQGLVSHICNLLTETATLCLDVDNKNNNEMAAPLLFSLLDILHSMLTYTSGIVRL--ALQAQKSGSGEDPQA--AEDLLLLNRPLTDLISLLIPLLPNEDPEIFDVSSKCLSILVQLYGGENPD-SLSPENVEIFAHLLTSKE--DPKEQKLLLRILRRMITSNE 1231
The following BLAST results are available for this feature:
BLAST of TCONS_00043702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ULK42.719e-1628.38Serine/threonine-protein kinase ULK4 OS=Homo sapie... [more]
back to top