TCONS_00043698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043698
Unique NameTCONS_00043698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043698 ID=TCONS_00043698|Name=TCONS_00043698|organism=Clytia hemisphaerica|type=transcript|length=312bp
gtttttatatagatgaaaaaataatgttatcctagcaaaacttgcttgat
ggcaatggattttagatttggttagttaCCATCATACTGCCCCAGTAACC
TAGATCCTTGAATTATTTTGTaccttcacgtggttggtaTACAATGagaa
ttggcttaaaatttgtctgaatttctcACGTACAAGGTTCTATATCTTTG
CAAACACCAAGACCAACAAATTCTGCTAATAAGATGGACAGGTGAAAAGC
ATGTTTAAACTCAAAGGAAACAACAATGGAATCTGATGTCATGGTTTGTT
TGCAGTTGGATN
Run BLAST on NCBI

transcript from alignment at sc0004481:1545..2405-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043698 ID=TCONS_00043698|Name=TCONS_00043698|organism=Clytia hemisphaerica|type=transcript|length=861bp|location=Sequence derived from alignment at sc0004481:1545..2405- (Clytia hemisphaerica)
GTTTTTATATAGATGAAAAAATAATGTTATCCTAGCAAAACTTGCTTGAT
GGCAATGGATTTTAGATTTGGTAAGTACATTTTTTTGGGGTTGAAATTTC
AAGTTTTTGTATGTAACAGAAAATTGCAACCAAAGTTCTAATATTAAATA
CATATGTAATTTTATGAAACTATGACTCTGACCGGTTTGGCTCTGACCGG
TTAGTAGATTTGCTCTGACCGGTTAGTAGATTGGCTCTGACCGGCTAATA
GATTAGCTCTGACCGGTTAATAGATTGGCTCTGACCGGTTAATACATTGG
CTCTGACCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGTTTGTG
TTCTGTATTTGTTCATGAGAGCTTGCTGCAAAAATCCTAATTCCCATTTT
CATTATTATATACTTTCAGGTTAGTTACCATCATACTGCCCCAGTAACCT
AGATCCTTGAATTATTTTGTACCTTCACGTGGTTGGTATACAATGAGAAT
TGGCTTAAAATTTGTCTGAATTTCTCACGTACAAGGTTCTATATCTTTGC
AAACACCAAGACCAACAAATTCTGCTAATAAGATGGACAGGTGAAAAGCA
TGTTTAAACTCAAAGGAAACAACAATGGAATCTGATGTCATGGTTTGTTT
GCAGTTGGATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027382XLOC_027382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043698-exon-sc0004481-1575043694:2336..2405TCONS_00043698-exon-sc0004481-1575043694:2336..2405Clytia hemisphaericaexon
TCONS_00043698-exon-sc0004481-1575043694:1545..1786TCONS_00043698-exon-sc0004481-1575043694:1545..1786Clytia hemisphaericaexon
TCONS_00043698-exon-sc0004481-1510915933:2336..2405TCONS_00043698-exon-sc0004481-1510915933:2336..2405Clytia hemisphaericaexon
TCONS_00043698-exon-sc0004481-1510915933:1545..1786TCONS_00043698-exon-sc0004481-1510915933:1545..1786Clytia hemisphaericaexon
TCONS_00043698-exon-sc0004481-1491911889:2336..2405TCONS_00043698-exon-sc0004481-1491911889:2336..2405Clytia hemisphaericaexon
TCONS_00043698-exon-sc0004481-1491911889:1545..1786TCONS_00043698-exon-sc0004481-1491911889:1545..1786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004481supercontigsc0004481:1545..2405 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66118	2.86656	0.389865	1.11841	0	0.707166	0	1.65004	2.13145	10.2616	3.3135	0	2.69668	5.53852	1.70312	3.70372	0.641004	1.17451	2.5783	5.74224	2.46442	5.06396	3.31117	7.03163	0	0	6.60348	4.22706	4.23978	4.43672
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top